PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G1131

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 200aa MW: 22485.6 Da PI: 7.5047

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1131	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.6	5.8e-10	9	102	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k+l s + ++rl++p k ++ + + +t+ le+ ++W v +++ r+k ++ vl +GW+ Fv+ n+ + gD ++ + +++++++ +++ Gh_A04G1131 9 FSKKL--SRTDINKRLTIPSKTLSFFpAFNAGHAVTIHLEH-AQKTWPVLCTIrRGKYKKPVLCGGWRAFVNFNNFNLGDRITMYKVQDRDGSSHFR 102 67788..66666778******877955566777888887.779**8856666669********************99777666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.8E-14	5	104	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.12E-11	6	104	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.093	7	109	IPR003340	B3 DNA binding domain
CDD	cd10017	6.88E-15	8	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MADESEIMFS KKLSRTDINK RLTIPSKTLS FFPAFNAGHA VTIHLEHAQK TWPVLCTIRR 60 GKYKKPVLCG GWRAFVNFNN FNLGDRITMY KVQDRDGSSH FRVEVENPPS ASNQHVELVN 120 DANATKSPVM LFGTDLNNEA TEMMCCMSKE VKEINFFGIK ESDPIAYSSG TSDAGDQRCN 180 LHAREVKLNL TLSPPNVEEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458573.1	1e-42	PREDICTED: uncharacterized protein LOC105779372
TrEMBL	A0A2P5W696	1e-148	A0A2P5W696_GOSBA; Uncharacterized protein
STRING	Gorai.012G167600.1	1e-45	(Gossypium raimondii)