PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G1143

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 156aa MW: 17245.8 Da PI: 10.2779

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1143	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.6	5.4e-28	8	153	1	115
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.......................kvkaeekewyfFskrdkkyatgkrk 74 +ppGfrFh tdeel+ +yL kk++++ +++ ++i+++d y++ P + + k k+ +ekewy F +rd ky++g r+ Gh_A04G1143 8 VPPGFRFHLTDEELILHYLMKKLSSSAFPV-SIIADADFYSSIPGTYQvKlalitlsmlsskesiinhyiasyKAVLGEKEWYIFRPRDGKYPNGARP 104 69**************************.89*******99984488999999999998877554444999************** PP NAM 75 nratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapk 115 n at +g+Wkatg+dk ++++ ++++g+kk Lvf+++++p+ Gh_A04G1143 105 NSATGDGFWKATGTDKIIVASsmaagrggVHSNIGVKKALVFHRQNKPS 153 ***************98666665443444********998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-28	5	153	IPR003441	NAC domain
PROSITE profile	PS51005	29.445	8	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	9	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MRHPHSSVPP GFRFHLTDEE LILHYLMKKL SSSAFPVSII ADADFYSSIP GTYQVKLALI 60 TLSMLSSKES IINHYIASYK AVLGEKEWYI FRPRDGKYPN GARPNSATGD GFWKATGTDK 120 IIVASSMAAG RGGVHSNIGV KKALVFHRQN KPSTHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-33	7	147	16	123	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-33	7	147	16	123	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-33	7	147	16	123	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-33	7	147	16	123	NO APICAL MERISTEM PROTEIN
3swm_A	4e-33	7	147	19	126	NAC domain-containing protein 19
3swm_B	4e-33	7	147	19	126	NAC domain-containing protein 19
3swm_C	4e-33	7	147	19	126	NAC domain-containing protein 19
3swm_D	4e-33	7	147	19	126	NAC domain-containing protein 19
3swp_A	4e-33	7	147	19	126	NAC domain-containing protein 19
3swp_B	4e-33	7	147	19	126	NAC domain-containing protein 19
3swp_C	4e-33	7	147	19	126	NAC domain-containing protein 19
3swp_D	4e-33	7	147	19	126	NAC domain-containing protein 19
4dul_A	4e-33	7	147	16	123	NAC domain-containing protein 19
4dul_B	4e-33	7	147	16	123	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458351.1	6e-65	PREDICTED: NAC transcription factor NAM-B1-like
Swissprot	Q84TD6	2e-44	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2P5YF69	3e-82	A0A2P5YF69_GOSBA; Uncharacterized protein
STRING	Gorai.012G169300.1	2e-64	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	5e-47	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]