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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A04G1244 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 282aa MW: 31547.2 Da PI: 9.9677 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A04G1244 | genome | NAU-NBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 319.8 | 8.5e-98 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
md+++ + rn+gyyep+ +k +l+lqlmss+ erdak r++nl + +++ a++++d m++ rd+++a+ ++k++++
Gh_A04G1244 1 MDENALNMRNWGYYEPS--FKGHLSLQLMSSMVERDAKSfipgRDSNL-MVTTNTAFHQQDpvvskvhipMNY-VRDSWIAD--------REKIFSMF 86
99999988*******99..*******************99********.************************.9*******........78999999 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
++++ +++ vl +t + sl l++++ +r+e+ a +e+++ +ke ++kkrq ++ pk ++akk+kk +k++ +
Gh_A04G1244 87 PATT-------PNYAVLLETPAAYSLPI-----LQPPPDSsTRDER--VASS-VEEPPANKEGVEPKKRQGGAAPKMPEAKKPKK----PKENANYTV 165
9665.......45667777777776766.....7777777334443..3333.356888888899999****************9....333334444 PP
GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
+ +k+ kksi + +ng ++D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y++s
Gh_A04G1244 166 --QCVKSAKKSIVFKINGYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFS 261
..5689******************************************************************************************** PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
p+DL++hWA+HGtnkfvtir
Gh_A04G1244 262 SPIDLRSHWARHGTNKFVTIR 282
********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MDENALNMRN WGYYEPSFKG HLSLQLMSSM VERDAKSFIP GRDSNLMVTT NTAFHQQDPV 60
VSKVHIPMNY VRDSWIADRE KIFSMFPATT PNYAVLLETP AAYSLPILQP PPDSSTRDER 120
VASSVEEPPA NKEGVEPKKR QGGAAPKMPE AKKPKKPKEN ANYTVQCVKS AKKSIVFKIN 180
GYDMDISGIP IPVCSCTGTA QQCYRWGFGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAAENYNF SSPIDLRSHW ARHGTNKFVT IR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
