PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1265
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27800.7 Da    PI: 7.5018
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1265genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye+ss
  Gh_A04G1265  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFSS 59
                 79***********************************************96 PP
2K-box904.3e-30831749100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +e +++++ +q++ kLk+++e Lq++qRh+lGe+L++L  keL+qLe+qL+ slkkiRs K+e+++eq+++l +ke++l e+n++Lr+kl+e
  Gh_A04G1265  83 TEIETQQRNYQDYLKLKAKVEVLQHSQRHFLGEELGDLGSKELEQLEHQLDFSLKKIRSLKMEHMVEQLSKLERKEEMLLETNRNLRRKLDE 174
                  56678899*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.824161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-41160IPR002100Transcription factor, MADS-box
CDDcd002658.33E-43278No hitNo description
SuperFamilySSF554554.84E-33289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2584172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.70788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFSSS  60
NSIADTLERY NRCTYGALEP GQTEIETQQR NYQDYLKLKA KVEVLQHSQR HFLGEELGDL  120
GSKELEQLEH QLDFSLKKIR SLKMEHMVEQ LSKLERKEEM LLETNRNLRR KLDENASTLR  180
STWETGEQSV PCNLQRPPFF EPLQCTTSMQ ISYNVPADLT HENIATTTSA PSGFIPDWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A9e-23751721101Developmental protein SEPALLATA 3
4ox0_B9e-23751721101Developmental protein SEPALLATA 3
4ox0_C9e-23751721101Developmental protein SEPALLATA 3
4ox0_D9e-23751721101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556440.0KC155644.1 Gossypium hirsutum MADS box protein MADS49 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722880.11e-177PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR28e-97MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1U8MBF41e-175A0A1U8MBF4_GOSHI; MADS-box protein CMB1-like
STRINGGorai.012G185600.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2452134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]