PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G1336

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7705.21 Da PI: 11.0521

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1336	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.8	4.5e-16	3	46	3	46
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +en + ++ s+Rr ++KKA ELS+LC+a+va++++s++gk+ Gh_A04G1336 3 SENLRGTKIATSRRRCSLFKKAAELSTLCGARVAIVVISKKGKV 46 67777778889*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0017	1	50	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.722	4	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.89E-12	7	46	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-14	10	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-6	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-6	30	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MASENLRGTK IATSRRRCSL FKKAAELSTL CGARVAIVVI SKKGKVECKR IVIIKHVDRK 60 WDFLMNND

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5W457	6e-25	A0A2P5W457_GOSBA; Uncharacterized protein
STRING	Gorai.009G356100.1	1e-24	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22354	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-09	AGAMOUS-like 62