PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G1339

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 197aa MW: 22038.1 Da PI: 4.6262

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1339	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.9	3e-14	19	66	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 kri n+ +r v fskR++g+l KA LS ++ ++ v+i+s++g++y+ Gh_A04G1339 19 KRIPNQKKRWVAFSKRKKGLLSKAARLSSITGEDIGVVIISEQGRFYT 66 79*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.497	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.1E-14	11	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-16	12	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-12	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-12	20	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-12	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-12	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MDEARPGRRG AGRRRIEIKR IPNQKKRWVA FSKRKKGLLS KAARLSSITG EDIGVVIISE 60 QGRFYTSDNA DAVIDRYLSI EAGKDNNVDG RKDDAGTSNQ GIVEDDNTYD GDGLDDGVTL 120 RLFPQEIGQD DDHNDDGRFG NGRVMDKQGL NLNQWDNVWK INDGEIKGEN CFMDLNKSPH 180 HDDDDGGADD DTMIHFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016737843.1	1e-141	PREDICTED: serum response factor-like
Refseq	XP_017604647.1	1e-141	PREDICTED: serum response factor-like
TrEMBL	A0A1U8NIN1	1e-139	A0A1U8NIN1_GOSHI; serum response factor-like
STRING	Gorai.009G356000.1	1e-105	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18369	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	9e-11	M-type_MADS family protein