PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1351
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 391aa    MW: 44639.7 Da    PI: 7.5195
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1351genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95e-0845105255
          AP2   2 gykGV.....rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GV     ++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  Gh_A04G1351  45 IYRGVtrqycFRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEAAAAHAYDLAALKYWG 105
                  689998888889*************99998898888888*****99*************98 PP
2AP2513.5e-16174225155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gh_A04G1351 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 225
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-1144115IPR016177DNA-binding domain
PfamPF008473.1E-445105IPR001471AP2/ERF domain
SMARTSM003806.7E-1245119IPR001471AP2/ERF domain
PROSITE profilePS5103217.62245113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1046114IPR001471AP2/ERF domain
CDDcd000182.63E-24174235No hitNo description
SuperFamilySSF541711.18E-17174235IPR016177DNA-binding domain
PfamPF008476.4E-12174225IPR001471AP2/ERF domain
PROSITE profilePS5103218.334175233IPR001471AP2/ERF domain
SMARTSM003801.2E-24175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17175234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAKLSQQNHK NTTQNNTSTA SNGVTKVKRT RRSVPRDSPP QRSSIYRGVT RQYCFRHRWT  60
GRYEAHLWDK NCWNESQNKK GRQGAYDDEA AAAHAYDLAA LKYWGQDTIL NFPVSLSLIF  120
IYMVCGRIEE ETYLTSTMQL STYQKELKEM EDQSREEYIG SLRRKSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW  240
LKPNQTKPEN NPNPNPNIID TTTTSLVTTN PDQELDLTFF NGNNHNQKLQ ESDVISETLL  300
TQPRPVNATS ALGLLLQSSK FKEMMEMTSA ATDHRQSTSM ISEPVRCGFP EDIQTYFECQ  360
DSSCYGNGDD LIFGELNSFG PSMFQCDQLD A
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741604e-58AB774160.1 Ricinus communis RcWRI2 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614765.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-105AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2V3Q80.0A0A0D2V3Q8_GOSRA; Uncharacterized protein
STRINGGorai.012G098200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-88ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]