PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1376
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 119aa    MW: 13557.6 Da    PI: 10.0913
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1376genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.96e-123312856
                 HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                 +++  LAk+l+L  rq+ vWFqNrRa+ k
  Gh_A04G1376  3 KQKLALAKQLNLRPRQIEVWFQNRRARTK 31
                 67789**********************98 PP
2HD-ZIP_I/II93.22.8e-302672692
  HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                 +++K +la++L+l+prq++vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Gh_A04G1376  2 TKQKLALAKQLNLRPRQIEVWFQNRRARTKLKQTEVDCEYLKRCCETLAEENKRLQKELQELR-ALK 67
                 589***********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.73133IPR001356Homeobox domain
CDDcd000862.21E-7334No hitNo description
SuperFamilySSF466891.03E-10342IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-11336IPR009057Homeodomain-like
PfamPF000462.3E-9331IPR001356Homeobox domain
PROSITE patternPS000270831IPR017970Homeobox, conserved site
SMARTSM003407.8E-253376IPR003106Leucine zipper, homeobox-associated
PfamPF021833.0E-113367IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MTKQKLALAK QLNLRPRQIE VWFQNRRART KLKQTEVDCE YLKRCCETLA EENKRLQKEL  60
QELRALKTSQ PFYMQLPATT LTMCPSCERV ATASTINASA STANAKTGGY TFFSSTSNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12533RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.95571e-141boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738518.11e-79PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466658e-56HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8NKH03e-78A0A1U8NKH0_GOSHI; homeobox-leucine zipper protein HAT14-like
STRINGGorai.012G100100.16e-76(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-48homeobox from Arabidopsis thaliana