PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1447
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 236aa    MW: 26865 Da    PI: 10.052
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1447genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13496192
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                 ffkvlt+ d  ++  l+lp +++++   ++ ++++k+l+++d  g  W++++++ ++  +r  + +GW +Fv+ ++L++gD +v++ d+++ + +
  Gh_A04G1447  4 FFKVLTKIDIERT--LSLPDSCLQALqqSQRSHGGKKLKVKDDIGILWNFRCTIrSGAVRRLHIVSGWVQFVRFKRLNTGDAIVLYKDDDTVTGP 96
                 8999999998877..9******98888755566899****************77344445588999********************666555545 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.5292106IPR003340B3 DNA binding domain
SuperFamilySSF1019367.59E-13392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-14391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-123104No hitNo description
SMARTSM010190.00144106IPR003340B3 DNA binding domain
PfamPF023628.4E-11492IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-9116209IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.274117223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-11117209IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-8118221No hitNo description
SMARTSM010190.73119223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MASFFKVLTK IDIERTLSLP DSCLQALQQS QRSHGGKKLK VKDDIGILWN FRCTIRSGAV  60
RRLHIVSGWV QFVRFKRLNT GDAIVLYKDD DTVTGPHYKI EVVKGHVNKI FLFKNMAIFV  120
KVLTKIDIER TLSLPDNRLQ ASPQSQRTHG DGGENLQVKD DVGILWNFHC TTRSGVVPKL  180
DMVSGWIQFV RFKQLNTGDV IVLNKDDDTL TGPHYKIEVF KGHGDDYSSF VHKNQI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.16e-70PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A2P5X6J01e-158A0A2P5X6J0_GOSBA; Uncharacterized protein
STRINGGorai.012G151200.14e-66(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3587022