PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0120
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 137aa    MW: 15549.3 Da    PI: 7.6617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0120genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.41e-094390154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                 s++kGV + k +g+W A+++       + +r++lg+f ++ +Aa a+  a+ +++
  Gh_A05G0120 43 SQFKGVMRQK-NGQWGAQLYA------NhTRIWLGTFKSEIDAAMAYNSAAAAIK 90
                 789***8666.8******887......34**********99******99998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1243103IPR016177DNA-binding domain
PfamPF008473.0E-54489IPR001471AP2/ERF domain
PROSITE profilePS5103215.19844101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-1444101IPR001471AP2/ERF domain
SMARTSM003801.7E-1244107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEEEITSLIL SGEANTHSDV SDSTSTTHQA NKRQRCGGKG NSSQFKGVMR QKNGQWGAQL  60
YANHTRIWLG TFKSEIDAAM AYNSAAAAIK FRTGDTYRNF PWNEITIEEP KFLSHYSVET  120
VLSMIRDGSY QYKFMDY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147522e-57JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441778.19e-90PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6882e-35RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A0D2THR62e-88A0A0D2THR6_GOSRA; Uncharacterized protein
STRINGGorai.009G020300.13e-89(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-32RAV family protein