PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0164
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 351aa    MW: 40002.3 Da    PI: 6.0279
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0164genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.78.9e-34121042103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+ ++++i+w + +nsf+v+d+  f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF++++F +gk +ll++i 
   Gh_A05G0164  12 FVVKTYQMVNDPMTNTVITWGKANNSFIVIDHLVFTQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFANEWFLRGKMHLLKNIV 99 
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_A05G0164 100 RRKHN 104
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-488101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-349101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-329101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-2812101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.2E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGNSTNIVA PFVVKTYQMV NDPMTNTVIT WGKANNSFIV IDHLVFTQRI LPVYFKHSNF  60
SSFVRQLNTY GFKKVDPDKW EFANEWFLRG KMHLLKNIVR RKHNKNLNRQ VKAEGLNEEE  120
EEEEEEDIVM EIAKLKEEQK SLEEEIKGMN KRLEATERRP QQMMAFLYKV VEDPDLLPRM  180
LLEKERKRQL NPDKKRRLMT VMPSSAQSSS SSLAVSSNSV KSEEEDECHA GTISSLETGY  240
DIGNNRFRYS SYQSSPSPED SKELLGHNNK QFVGQFMNYG CATVTRLLPS VIVAPSVIVN  300
GLTVSSSSVT SSKAGYGDRN EQVGYFGELV AEEMEARPPL PYPFSLLEGG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-21910126129Heat shock factor protein 1
5d5v_B3e-21910126129Heat shock factor protein 1
5d5v_D3e-21910126129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674080.0KR067408.1 Gossypium hirsutum HSF27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701191.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV522e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1U8KF750.0A0A1U8KF75_GOSHI; heat stress transcription factor C-1-like
STRINGGorai.009G024700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-77heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]