PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0200

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 366aa MW: 41047 Da PI: 7.4238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0200	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	135	155	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ G+ C FaHg Gh_A05G0200 135 ACPDFRK-GNCRKGEACEFAHG 155 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-5	130	156	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	131	157	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-5	134	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	135	155	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	165	189	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	165	188	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MMLGETHRFN PTVHVPPWPS FDDDQTAEVH SPLNYNAPCN HFNNNSNPFY LQEALGMLRR 60 YLPSNELDIE SDSELSFHPD SPVDACSCDH FRMFEFKVRR CGRGRAHDWT DCPYAHPGEK 120 ARRRDPRKYH YSGTACPDFR KGNCRKGEAC EFAHGVFECW LHPARYRTQP CKDGTSCRRR 180 VCFFAHTPEQ LRVVSSVDSY DGSPSSAKTL SFSGSPPMSP RAEPSPPISP MAQSLNRSLA 240 SASINEAVAS MRNLQLGKVK SLPSSWNVQV GCCSPAFGSP RGAVIRPSFC SLPSTPTQNL 300 TRPAIGHLDF WDEACEEEPQ MERVESGRDL RAKMFEKLCK ENSLERVNPT QSSGGPNVDW 360 VSDLVK

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MMLGETHRFN PTVHVPPWPS FDDDQTAEVH SPLNYNAPCN HFNNNSNPFY LQEALGMLRR  60
YLPSNELDIE SDSELSFHPD SPVDACSCDH FRMFEFKVRR CGRGRAHDWT DCPYAHPGEK  120
ARRRDPRKYH YSGTACPDFR KGNCRKGEAC EFAHGVFECW LHPARYRTQP CKDGTSCRRR  180
VCFFAHTPEQ LRVVSSVDSY DGSPSSAKTL SFSGSPPMSP RAEPSPPISP MAQSLNRSLA  240
SASINEAVAS MRNLQLGKVK SLPSSWNVQV GCCSPAFGSP RGAVIRPSFC SLPSTPTQNL  300
TRPAIGHLDF WDEACEEEPQ MERVESGRDL RAKMFEKLCK ENSLERVNPT QSSGGPNVDW  360
VSDLVK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.5832	0.0	boll\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750066.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like isoform X1
Swissprot	Q9M0G2	1e-141	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A1U8PFR1	0.0	A0A1U8PFR1_GOSHI; zinc finger CCCH domain-containing protein 20-like isoform X1
STRING	Gorai.009G029300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-133	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]