PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0559
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 424aa    MW: 46731 Da    PI: 8.1491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0559genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12356401655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Gh_A05G0559 356 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 401
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16353416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-13354405No hitNo description
Gene3DG3DSA:4.10.280.103.6E-16355420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESDLQHHHH HHLLDYHQPQ HNQKQMNSGL TRYQSAPSSY FSNILDRDFC QEILNRPSSP  60
ETERIIAKFL SSSGDAAGGG DANTENIPPQ NLCTATQSSP VRETPVKIEQ PTQIMTPINN  120
QTGLMQQPNY SSASQNFYQS QPPQYLLNQQ PSASAVDYTT PNPTGMKMGG SNNSNLIRHS  180
SSPAGLFSKI NIENIAGYGV MRGMGDYGSV NSSNREATFR SASRPPTPSG LMTPIAEMGN  240
KSMGPFSSEN AGFGENRPSN YSSGLPVTSW DDSMMISDNM SGIKRLREDD RSLSGLDGAE  300
TKNADGGNHR PPPLLAHHLS LPKSSDMSAI EKFLQYQDSV PCKIRAKRGC ATHPRSIAER  360
VRRTKISERM RKLQDLVPNM DKQTNTADML DLAVDYIKDL QKQVKSLSDS RAKCSCAAQQ  420
QQQQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627829.10.0PREDICTED: transcription factor bHLH122 isoform X1
RefseqXP_017627830.10.0PREDICTED: transcription factor bHLH122 isoform X1
TrEMBLA0A1U8PI000.0A0A1U8PI00_GOSHI; transcription factor bHLH122-like isoform X1
STRINGGorai.009G071900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-63bHLH family protein