PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0618

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 291aa MW: 32958.3 Da PI: 8.707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0618	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F +k + H+r H Gh_A05G0618 32 FFCRYCGKGFMSKRAMAGHLRIH 54 67*******************98 PP
2	zf-C2H2	13.1	0.00028	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++sFs+ +L +H + H Gh_A05G0618 81 FSCLVCTESFSSMKLLCQHTNIH 103 89******************997 PP
3	zf-C2H2	12.8	0.00037	216	236	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++Cgk+F + L H Gh_A05G0618 216 HQCEICGKTFETGQALGGHKT 236 79********99888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.01E-6	23	57	No hit	No description
Pfam	PF13894	0.0016	32	54	No hit	No description
PROSITE profile	PS50157	12.632	32	59	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0042	32	54	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	34	56	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.06E-7	80	103	No hit	No description
SMART	SM00355	0.92	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.995	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	105	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.06E-7	211	238	No hit	No description
SMART	SM00355	0.1	216	238	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.2E-9	216	239	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.637	216	243	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	218	238	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVPADSCSLP FLGGKYLKTQ DAETPHDSRN SFFCRYCGKG FMSKRAMAGH LRIHSHHHPT 60 SKTELQQQQQ DVDDDDDDDF FSCLVCTESF SSMKLLCQHT NIHRHMDSSQ ESNVISSGVD 120 TVVKQGNGPH TIDSIKDFNF KWSRTGKRGS NRIPSQDAQP LKLRVTPPHM ETRKNKKMKT 180 EDTSMEFELG GTKSASGVDP CHARRSRKNK AVKSEHQCEI CGKTFETGQA LGGHKTYHRV 240 KKNKVELLQQ GKTKQEPCMM TPMLLPHLSQ QPDLSHPKTM LDFDLNIPYQ Q

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394924	1e-119	GQ394924.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1947 SSR marker DPL0266 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604245.1	0.0	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A1U8J703	0.0	A0A1U8J703_GOSHI; zinc finger protein ZAT9-like
STRING	Gorai.009G078100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18352	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-07	C2H2-like zinc finger protein