PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0652
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 410aa    MW: 45848.7 Da    PI: 8.5222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0652genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1591.9e-49191451128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  + pGfrF+Ptd el+++yL+kk+eg +  + evi+e++i+++ePwdLp k+v ++++ew+fF+ r +ky++g++++rat++gyWkatgk+++v+s ++
  Gh_A05G0652  19 MFPGFRFSPTDVELISYYLTKKLEGYEKCV-EVIPEIEICRYEPWDLPdKSVIKSDNEWFFFCARGRKYPNGSQSRRATEQGYWKATGKERNVKS-GS 114
                  579************************777.99***************777777899**************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g+k+tLvf++grapkge+t+W+mhey +
  Gh_A05G0652 115 NVIGTKRTLVFHTGRAPKGERTEWIMHEYCM 145
                  *****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5510160IPR003441NAC domain
PROSITE profilePS5100552.47319161IPR003441NAC domain
PfamPF023657.9E-2521144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAGEGVSRET QMSIEASSMF PGFRFSPTDV ELISYYLTKK LEGYEKCVEV IPEIEICRYE  60
PWDLPDKSVI KSDNEWFFFC ARGRKYPNGS QSRRATEQGY WKATGKERNV KSGSNVIGTK  120
RTLVFHTGRA PKGERTEWIM HEYCMNGKSQ DSLVVCRLRK NSEFRLNNTS IRAPRTAPQL  180
SPMHDSNCAT SNGGADQTGT YKGDKAYLKK GTSSYDSHSI EQFDSASESE QKLSNEIGTT  240
DSSTPQKDSD AEEDYFAEIL KDDIIKLDET PLSARPDISP RIASSSDTGQ RRREQPRKEN  300
EPHVAHLQGT ANRRIKLRKP KAGDCVVAAK GSTELERGVG EMSIEKLTSP KSGDSPKWLL  360
SLFSPSTANL RFIYATFVIL TLVALFLTVL LGGFQACKKL QIYATLLNNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-411816016164NO APICAL MERISTEM PROTEIN
1ut4_B1e-411816016164NO APICAL MERISTEM PROTEIN
1ut7_A1e-411816016164NO APICAL MERISTEM PROTEIN
1ut7_B1e-411816016164NO APICAL MERISTEM PROTEIN
3swm_A1e-411816019167NAC domain-containing protein 19
3swm_B1e-411816019167NAC domain-containing protein 19
3swm_C1e-411816019167NAC domain-containing protein 19
3swm_D1e-411816019167NAC domain-containing protein 19
3swp_A1e-411816019167NAC domain-containing protein 19
3swp_B1e-411816019167NAC domain-containing protein 19
3swp_C1e-411816019167NAC domain-containing protein 19
3swp_D1e-411816019167NAC domain-containing protein 19
4dul_A1e-411816016164NAC domain-containing protein 19
4dul_B1e-411816016164NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311318NRRIKLRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472390.0KC847239.1 Gossypium hirsutum NAC domain protein NAC62 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750700.10.0PREDICTED: NAC domain-containing protein 40-like
SwissprotQ94F588e-99NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A1U8PHP90.0A0A1U8PHP9_GOSHI; NAC domain-containing protein 40-like
STRINGGorai.009G083500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.11e-101NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]