PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0672

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 227aa MW: 25623.2 Da PI: 7.944

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0672	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.3e-11	136	187	1	52
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 e+e k+ + k+kNR++A +sR++ k+ + Leekv++L +eN Lkk l+ Gh_A05G0672 136 EAEQKKRKNKIKNRISAEKSRAKSKEHTRFLEEKVEQLRNENAHLKKLLSLV 187 67899*****************************************877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.4E-12	133	185	No hit	No description
Pfam	PF00170	1.5E-8	136	188	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.0E-4	136	203	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.013	138	189	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-9	140	190	No hit	No description
PROSITE pattern	PS00036	0	143	158	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGDSKLDWAS LLGGLPDSDE LMSLLMNDVK VEKPEDEQPQ EGSKFLVQPT TVIPQQQDIH 60 NVATDVETGS SSCRLNDQNK IIRNGGCLIN PLGFPYRSRM QVLAADAPSG SGELLVMNDL 120 PVYKRGRNNI QEAIEEAEQK KRKNKIKNRI SAEKSRAKSK EHTRFLEEKV EQLRNENAHL 180 KKLLSLVRDL TFSSIVCTGK RRDLWEKAKQ CLELKELQTY IGAVYGD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15239	1e-141	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443100.1	1e-136	PREDICTED: uncharacterized protein LOC105767988 isoform X1
Refseq	XP_012443101.1	1e-136	PREDICTED: uncharacterized protein LOC105767988 isoform X1
TrEMBL	A0A0D2TLX2	1e-135	A0A0D2TLX2_GOSRA; Uncharacterized protein
STRING	Gorai.009G085700.1	1e-136	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24557	2	3