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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A05G0677 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | bZIP | ||||||||
| Protein Properties | Length: 1318aa MW: 148665 Da PI: 6.139 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 31.4 | 4.2e-10 | 222 | 256 | 4 | 38 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38
k rr+++NReAAr+sR+RKka++++Le +L
Gh_A05G0677 222 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKL 256
6889************************9754444 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00338 | 1.2E-6 | 219 | 286 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 9.14 | 221 | 265 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF00170 | 5.6E-7 | 222 | 263 | IPR004827 | Basic-leucine zipper domain |
| SuperFamily | SSF57959 | 7.03E-6 | 223 | 266 | No hit | No description |
| CDD | cd14708 | 8.22E-23 | 223 | 275 | No hit | No description |
| Gene3D | G3DSA:1.20.5.170 | 1.3E-6 | 225 | 253 | No hit | No description |
| PROSITE pattern | PS00036 | 0 | 226 | 241 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF14144 | 5.3E-29 | 304 | 379 | IPR025422 | Transcription factor TGA like domain |
| SMART | SM01335 | 3.7E-17 | 600 | 653 | IPR012982 | PADR1 domain |
| Pfam | PF08063 | 1.4E-17 | 603 | 652 | IPR012982 | PADR1 domain |
| PROSITE profile | PS50172 | 16.928 | 687 | 780 | IPR001357 | BRCT domain |
| SMART | SM00292 | 4.7E-12 | 689 | 770 | IPR001357 | BRCT domain |
| Pfam | PF00533 | 8.2E-11 | 689 | 767 | IPR001357 | BRCT domain |
| SuperFamily | SSF52113 | 2.22E-16 | 689 | 778 | IPR001357 | BRCT domain |
| Gene3D | G3DSA:3.40.50.10190 | 1.6E-17 | 689 | 778 | IPR001357 | BRCT domain |
| CDD | cd00027 | 1.06E-9 | 694 | 768 | No hit | No description |
| SuperFamily | SSF142921 | 1.96E-25 | 804 | 933 | IPR008893 | WGR domain |
| CDD | cd08001 | 2.82E-35 | 831 | 935 | No hit | No description |
| SMART | SM00773 | 6.1E-23 | 839 | 922 | IPR008893 | WGR domain |
| Pfam | PF05406 | 4.3E-12 | 839 | 918 | IPR008893 | WGR domain |
| Gene3D | G3DSA:1.20.142.10 | 4.5E-23 | 923 | 1091 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| PROSITE profile | PS51060 | 19.678 | 955 | 1074 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| CDD | cd01437 | 1.59E-112 | 955 | 1306 | No hit | No description |
| SuperFamily | SSF47587 | 7.72E-29 | 955 | 1091 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| Pfam | PF02877 | 1.5E-20 | 956 | 1089 | IPR004102 | Poly(ADP-ribose) polymerase, regulatory domain |
| PROSITE profile | PS51059 | 64.563 | 1083 | 1314 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
| SuperFamily | SSF56399 | 2.4E-46 | 1092 | 1310 | No hit | No description |
| Pfam | PF00644 | 8.0E-51 | 1093 | 1307 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
| Gene3D | G3DSA:3.90.228.10 | 5.1E-50 | 1094 | 1308 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0006471 | Biological Process | protein ADP-ribosylation | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1318 aa Download sequence Send to blast |
MENHRIGKTG LTNSGPSSNY HHHAVLHGMN APIIEIDAFN MFALLISLKG CRFLSISHQN 60 GPAFGFGELE EAIVPHGVEL TNDEAKAPAL FTRSRPSSAA LEMLPSNWSL RFQQTPRGSW 120 NSRGESTDSV SSSAVNTLPS NQLQPESPIS QKASSSADHH QLFNHKPLQQ QRLEMASDIS 180 SLNQSAAQEK LQEQESHNNQ QSATLPRNFG RGSSSSDKQL DAKTLRRLAQ NREAARKSRL 240 RKKAYVQQLE SSRIKLAQLE QDLQRTRSRG FFVGGCAAAF GNISSGAARF DMEYSRWLED 300 DHRHLSELRT GLHAHLPDTD LQTIVDGYIS HYDKLFRLKE AAAKSDVLHL ITGMWMTPVE 360 RCFVWIGDFR PSELIKMLVS QLDPLTEHQV MGICNLQHSS QQAEEALTLG LEQLYHSLID 420 SIAGGPVIHE MQQMAVALSK LANLEGFLHQ ADNLRQQILH QLPRILTVRQ TARCFLVIGE 480 YNQRLRVLSS LWTPHGPPEL RMNQLHEKRS HSHAHGTGDE EKIMTRKQKA DQLKSNEGNE 540 SPKKPKVEAD NDQHNGKTTT EVAKEFEEFC KSVREHLSVA QMREILEANG QDSSGSDASV 600 VIKCLDMLFY GPLEKCQICN GDLEFDGNRY SCKGTYSEWS SCVYKTRSPA RKQEPFKLPD 660 SVLNSPVAEL VKKYEDPKLR PHRYVGVTDK PFLGMMISLM GRLSRTHQYW KTKIEKHGGT 720 VSNSVIGSVT CLVASPAERE RGGSSKLVEA MERGVRVVSE AWLLDSIEKQ EAQPLEAYDI 780 VTDLAVDGKG IPWDKQVPEE HAIESLSAEL KLYGKRGVYK DTRLQEQGGQ IFEEDGILYN 840 CVFSLCDQGG AINEYCIMQL VKVPDSNLHL YYKKGRVGDD PNAQERLEEW KDVDGAVEEF 900 VRLFEEVTGN EFEPWEREKK FQKKPLKFYP IDMDDGVDVR CGGLGLRQLG VAAAHCKLEP 960 MVANFMKVLC SQEIYKYALM EMDLDAPDLP MGMLSNVHLE RCEEVLQEFI EKVKSMKESG 1020 PKAEAVWSDF SQRWFTLMHS SRPFIFRDYQ ELADHAAASF ECVRDIVVAS HMIGHMGDDT 1080 LDDPLSDRYK KIGCSISPLD KDSEDYKMIL NYVEKTYEPV KLADIEYGIS VENIFNVETK 1140 EGPSFDEVKK LPNKRLLWCG TRSSNLLRHL HKGFLPASCS LSVPGYMFGK GIVCSDAAAE 1200 AARYGFTAVD RPEGFLVLAV FSQGEEIMEL KNPPEDTKPL EEKKVCVKGL GRKKPDESEY 1260 IDWKDDIKVP CGRLIPSEHQ DSPLEYNEYT VYDPKQVSMR FLVGVKFEEK DTVMDAQD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4opx_C | 6e-59 | 809 | 1313 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4opx_F | 6e-59 | 809 | 1313 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqa_C | 6e-59 | 809 | 1313 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqa_F | 6e-59 | 809 | 1313 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqb_C | 6e-59 | 809 | 1313 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| 4oqb_F | 6e-59 | 809 | 1313 | 7 | 496 | Poly [ADP-ribose] polymerase 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity). {ECO:0000250|UniProtKB:Q9Y6F1}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JX581673 | 7e-41 | JX581673.1 Gossypium hirsutum clone NBRI_GE14350 microsatellite sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016750901.1 | 0.0 | PREDICTED: poly [ADP-ribose] polymerase 3 isoform X2 | ||||
| Swissprot | Q9SWB4 | 0.0 | PARP3_SOYBN; Protein ADP-ribosyltransferase PARP3 | ||||
| TrEMBL | A0A1U8PI66 | 0.0 | A0A1U8PI66_GOSHI; Poly [ADP-ribose] polymerase | ||||
| STRING | Gorai.009G086300.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM12149 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G08320.3 | 1e-146 | bZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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