PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0801

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 654aa MW: 73596.3 Da PI: 7.0733

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0801	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	378.2	1e-115	277	646	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+ v+ +d++ a++lL+++s+++s +gd +qRla+yf +AL++rla+++ y l +++ts +++l+a+ +++ ++P k+s++ aN+ Gh_A05G0801 277 SLLIQCAQSVAINDQRTANELLKQISQHSSDSGDGTQRLAHYFGNALKTRLAGKGAPSYLHLGSNKTS---AADVLKAYGVYVLACPSKKMSNFCANK 371 79*************************************************888888888777776...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 I+e +e ++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++ Gh_A05G0801 372 KIMEVAEMATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLKRYCERFNVPFEYNV-IAKKWETIQLEELKI 468 ************************************************9************************9.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 + +E+++Vn++++l++l+d++++ +s+rd+vLkl+ks++P ++++ + +n++ F++rf eal ++sa fd +ea++ re+ er+++E+e+lgr++ Gh_A05G0801 469 NYDEVVVVNCMYRLKNLPDDTMAPTSARDTVLKLIKSINPAIFIHGVANGTYNAPFFVTRFREALFHFSAQFDIFEANVCREDAERMMYEKEVLGRDV 566 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +nvvaceg+er+er et+++W+++ +aGFk++pl+++ +k+++ +++ + + + v+ + ++++gWk+r ++++S+W+ Gh_A05G0801 567 MNVVACEGSERVERPETYKQWQAKTLRAGFKQAPLEQELMKKVRNMVQCNYHRDFAVDVDGRWMLQGWKGRVIYALSFWK 646 ***********************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.344	249	626	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-113	277	646	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MDTLFQDFPR FNFDNGSEPT YTNHNLVNGF KEGSPESPDG YASSSGSCVQ GHPLDNIPFA 60 NEMLKYINEM LMEEDLQEKS CMLQDCLALQ AAEKSFYEVL GHQYPLSLHP ISPFPDDNLA 120 QTSNSYNITG TNSVKSSSGM YGSLERTSLS EPFTESPHSG DKVLLPPQSI LSSPCVPDGR 180 YKSPLSSKGR KNYQREDGDY LEEGRISKQS ATSLEDSEQS DIFDEVLLCK GENEVSPKFS 240 LNGNSPKNGQ LKGSINGGTG SRRKKSSKRS EVVDLWSLLI QCAQSVAIND QRTANELLKQ 300 ISQHSSDSGD GTQRLAHYFG NALKTRLAGK GAPSYLHLGS NKTSAADVLK AYGVYVLACP 360 SKKMSNFCAN KKIMEVAEMA TTLHIVDFGI CYGFQWPCLI QRLSARAGGP PKLRITGIEF 420 PQPGFRPAER VEETGRRLKR YCERFNVPFE YNVIAKKWET IQLEELKINY DEVVVVNCMY 480 RLKNLPDDTM APTSARDTVL KLIKSINPAI FIHGVANGTY NAPFFVTRFR EALFHFSAQF 540 DIFEANVCRE DAERMMYEKE VLGRDVMNVV ACEGSERVER PETYKQWQAK TLRAGFKQAP 600 LEQELMKKVR NMVQCNYHRD FAVDVDGRWM LQGWKGRVIY ALSFWKPVKN DPYL

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MDTLFQDFPR FNFDNGSEPT YTNHNLVNGF KEGSPESPDG YASSSGSCVQ GHPLDNIPFA  60
NEMLKYINEM LMEEDLQEKS CMLQDCLALQ AAEKSFYEVL GHQYPLSLHP ISPFPDDNLA  120
QTSNSYNITG TNSVKSSSGM YGSLERTSLS EPFTESPHSG DKVLLPPQSI LSSPCVPDGR  180
YKSPLSSKGR KNYQREDGDY LEEGRISKQS ATSLEDSEQS DIFDEVLLCK GENEVSPKFS  240
LNGNSPKNGQ LKGSINGGTG SRRKKSSKRS EVVDLWSLLI QCAQSVAIND QRTANELLKQ  300
ISQHSSDSGD GTQRLAHYFG NALKTRLAGK GAPSYLHLGS NKTSAADVLK AYGVYVLACP  360
SKKMSNFCAN KKIMEVAEMA TTLHIVDFGI CYGFQWPCLI QRLSARAGGP PKLRITGIEF  420
PQPGFRPAER VEETGRRLKR YCERFNVPFE YNVIAKKWET IQLEELKINY DEVVVVNCMY  480
RLKNLPDDTM APTSARDTVL KLIKSINPAI FIHGVANGTY NAPFFVTRFR EALFHFSAQF  540
DIFEANVCRE DAERMMYEKE VLGRDVMNVV ACEGSERVER PETYKQWQAK TLRAGFKQAP  600
LEQELMKKVR NMVQCNYHRD FAVDVDGRWM LQGWKGRVIY ALSFWKPVKN DPYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-48	279	646	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14419	0.0	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683334.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	P0C883	0.0	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A1U8J553	0.0	A0A1U8J553_GOSHI; scarecrow-like protein 33
STRING	Gorai.009G098100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein