PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0802

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 517aa MW: 58689.9 Da PI: 9.0239

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0802	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	264.8	2.9e-81	197	492	68	374
GRAS 68 etseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetge 163 +++++ +++l+++ l++ v+P +s+l N+ I + +e++++vH+iDf i +G+QWp+L++ L++R++g+p+lRiTg++ p++g +e++e++g+ Gh_A05G0802 197 PSNTTLAADVLKSHILYVSVCPSGSISNLFSNRNIAKLAEKATTVHVIDFAIAYGFQWPCLIHRLSTRSGGSPKLRITGIDFPQPGfrPAERIEAIGR 294 4555558999999999*******************************************************************9******** PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 rL++ +e+++vpfefn+ +akr+e+++ eeL+++++E l+Vn++l+ r vLkl+k+l P++++ + ++n + F +rf ea+ Gh_A05G0802 295 RLRRCCENVNVPFEFNA-IAKRWETIRAEELNIEREELLVVNFMLNSPRN------------MVLKLIKRLDPDLFIQGVVNGNYNFPFFINRFREAF 379 *************.7*********************965555............5******************************* PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 ++sa+fd lea+++ e+ +r +E+e +gr++ nv+a eg +r++r e++++W+ r ++aGF+++pl++++ + a+++l+ + +g+ +e + ++++ Gh_A05G0802 380 FHFSAMFDILEANVGGEDPDRLLLEKETFGRDAINVIAYEGMDRINRPEKYKQWQLRNQKAGFRQLPLEQNILNRARTVLKSDYHKGFDIEVDGQWML 477 ********************************************************************************************** PP GRAS 360 lgWkdrpLvsvSaWr 374 +gWk++++ ++S+W+ Gh_A05G0802 478 QGWKGKAIHALSCWK 492 ************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.288	111	472	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-78	197	492	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MAENPVNGSN CRVDPGSAKS NNHPGSNSEG NCPYALQAAE KAFYDVLTQK YPSSPPHFHH 60 NLQVPNKSTW SNDPHGYFDS LEERRKNKHL AMAVEGLSEE HMFDEVFLVK TGNGVSMSCP 120 LYEAYQNRTA NSKLEDNGGL KRNNSKRIPA KKQVGNGKEM VDFGSLLTQC AQAVAVYDQR 180 AATELLGKIR APFTQIPSNT TLAADVLKSH ILYVSVCPSG SISNLFSNRN IAKLAEKATT 240 VHVIDFAIAY GFQWPCLIHR LSTRSGGSPK LRITGIDFPQ PGFRPAERIE AIGRRLRRCC 300 ENVNVPFEFN AIAKRWETIR AEELNIEREE LLVVNFMLNS PRNMVLKLIK RLDPDLFIQG 360 VVNGNYNFPF FINRFREAFF HFSAMFDILE ANVGGEDPDR LLLEKETFGR DAINVIAYEG 420 MDRINRPEKY KQWQLRNQKA GFRQLPLEQN ILNRARTVLK SDYHKGFDIE VDGQWMLQGW 480 KGKAIHALSC WKPVKGLICL HIHQTEITQY PKFNLNF

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MAENPVNGSN CRVDPGSAKS NNHPGSNSEG NCPYALQAAE KAFYDVLTQK YPSSPPHFHH  60
NLQVPNKSTW SNDPHGYFDS LEERRKNKHL AMAVEGLSEE HMFDEVFLVK TGNGVSMSCP  120
LYEAYQNRTA NSKLEDNGGL KRNNSKRIPA KKQVGNGKEM VDFGSLLTQC AQAVAVYDQR  180
AATELLGKIR APFTQIPSNT TLAADVLKSH ILYVSVCPSG SISNLFSNRN IAKLAEKATT  240
VHVIDFAIAY GFQWPCLIHR LSTRSGGSPK LRITGIDFPQ PGFRPAERIE AIGRRLRRCC  300
ENVNVPFEFN AIAKRWETIR AEELNIEREE LLVVNFMLNS PRNMVLKLIK RLDPDLFIQG  360
VVNGNYNFPF FINRFREAFF HFSAMFDILE ANVGGEDPDR LLLEKETFGR DAINVIAYEG  420
MDRINRPEKY KQWQLRNQKA GFRQLPLEQN ILNRARTVLK SDYHKGFDIE VDGQWMLQGW  480
KGKAIHALSC WKPVKGLICL HIHQTEITQY PKFNLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-38	171	493	55	379	Protein SCARECROW
5b3h_D	5e-38	171	493	55	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982223.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A2P5VZS9	0.0	A0A2P5VZS9_GOSBA; Uncharacterized protein
STRING	Gorai.009G098200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28591	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-130	SCARECROW-like 14