PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0820

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 295aa MW: 32098.8 Da PI: 9.4819

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0820	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Gh_A05G0820 48 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKKK 108 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-35	32	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MQLNHQQGSC SENPQFPPLP TDHHVGASGS IRAGSMADRA RLAKVPQPEA ALKCPRCEST 60 NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG ALRNVPVGGG CRRNKKKKSS SSSKPSASAE 120 RQSGSNSINA VIPSEITAHL PHQTPHLPFM ASLQNFSQYG IGNIGLNFGG IHGQIGATSD 180 CGERSDMGFQ IGTNSDVSNA ILSVRSGIHQ QFPFIEPTNG LYPLQSEYIE ASPSMVEESQ 240 LLRSTSSSSR VSQRGPVKME NNNQGLNLSR PLLGVSDQNN QYWGGNSWTD LSGLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750569.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
TrEMBL	A0A1U8PK25	0.0	A0A1U8PK25_GOSHI; dof zinc finger protein DOF2.2-like isoform X1
STRING	Gorai.009G100100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-49	Dof family protein