PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0861
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 481aa    MW: 53172.1 Da    PI: 6.9219
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0861genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17150199155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gh_A05G0861 150 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 199
                  78*******************......55************************997 PP
2AP241.24.1e-13242292155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Gh_A05G0861 242 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 292
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16150208IPR016177DNA-binding domain
PfamPF008473.9E-9150199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17151208IPR001471AP2/ERF domain
PROSITE profilePS5103217.754151207IPR001471AP2/ERF domain
SMARTSM003806.4E-32151213IPR001471AP2/ERF domain
CDDcd000181.05E-23151206No hitNo description
PfamPF008471.3E-8242292IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16242300IPR016177DNA-binding domain
CDDcd000183.09E-25242300No hitNo description
Gene3DG3DSA:3.30.730.101.3E-15243300IPR001471AP2/ERF domain
PROSITE profilePS5103215.527243300IPR001471AP2/ERF domain
SMARTSM003805.2E-32243306IPR001471AP2/ERF domain
PRINTSPR003679.1E-6244255IPR001471AP2/ERF domain
PRINTSPR003679.1E-6282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLDLNLNVAS TQDSACVTLV TNKLKEYCGN QMDESETSNS SIVNDDDESC STRANAFTLS  60
FDILKVGSGE TEYGNDDAPV VVTKELFPVK RVGEDFRSPE GQSSGSSNYN KWIDLSFERK  120
EVADPRVMQQ QQPSQMTVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF  180
DTAHSAARAY DRAAIKFRGV DADINFSLSD YEDDMKQMKN LTKEEFVHIL RRQSTGFSRG  240
SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA RAYDKAAIKC NGREAVTNFE  300
PRSYEGDIIL DTSNEGNTHN LDLNLGISPP VGNGSVGNEE HPHFHSGTFD INGGKSLRAE  360
NPAAATVGPA YKGLAGTSDQ PILWSSVYPR CFPSEERAMV RRVDIGPPQG PPNWTCQMRS  420
QFSATATPLF STAASSGFSY LAITPAAPKP INQMTQNLCF TSSTATATNA AEINFQMQPP  480
P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844371e-130KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750510.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-119RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U8PH550.0A0A1U8PH55_GOSHI; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGGorai.009G104200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-137related to AP2.7