PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1373
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 173aa    MW: 18335.6 Da    PI: 5.6211
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1373genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.61.1e-0985109125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Cr lLsYP G +  +C++C tV
  Gh_A05G1373  85 CGSCRQLLSYPEGTRQAKCSCCETV 109
                  ************************9 PP
2zf-LSD136.11.1e-11123147125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  C +C  lL+YP+G++sV+C++C  V
  Gh_A05G1373 123 CDSCALLLMYPYGSSSVKCSSCLSV 147
                  **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.8E-1482112IPR005735Zinc finger, LSD1-type
PfamPF069434.4E-785109IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-9120148IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-8123147IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRADAGSSR PPPSPLIFSG SDPYSVSDRV DTGTAPQIAE SGSSPPPPLV FAGSDPYRVS  60
DRVDTSTASQ IAPSPEMAQM AQMVCGSCRQ LLSYPEGTRQ AKCSCCETVN FVLEAHQVGL  120
VRCDSCALLL MYPYGSSSVK CSSCLSVTEI GEHNRRPPWS VQQGQPTPPN SVH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.183910.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431022e-58AC243102.1 Gossypium arboreum clone GM226J06-jme, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698155.16e-67PREDICTED: protein LOL2-like
RefseqXP_017605048.16e-67PREDICTED: protein LOL2
SwissprotO654262e-38LOL2_ARATH; Protein LOL2
TrEMBLA0A0B0NNA15e-91A0A0B0NNA1_GOSAR; Protein LOL2-like protein
STRINGGorai.009G169900.18e-87(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-34lsd one like 2