PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1381
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 343aa    MW: 38165.9 Da    PI: 9.7062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1381genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-54171441128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ ++
  Gh_A05G1381  17 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIVTSnGN 113
                  79****************************.89***************8888999*************************************998677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy+g+ pkg kt+W+mheyrl
  Gh_A05G1381 114 QKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 144
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-658179IPR003441NAC domain
PROSITE profilePS5100562.78917179IPR003441NAC domain
PfamPF023653.1E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESTDSSSAS ASAHPQLPPG FRFHPTDEEL VVHYLKKKAA SAPLPVTIIA EVDLYKFDPW  60
ELPSKATFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPIVTS NGNQKVGVKK  120
ALVFYRGKPP KGIKTNWIMH EYRLIDNNSS TSKPQIVDLP NRKASLRLDD WVLCRIYKKN  180
NTQRPMETDK EYTMEGMLAT QLPTSSHQNL NALTSKATSY GSLLQHEDNF FEGILTEGMR  240
SSSNISQLAV SSSSKQNLPM AFPVKRTLPP QYWNEPSSTG SQSGKRFQQG DINCSSRGGN  300
IDDTNSFVSL LNQLPQNTPF YPGSMVGSLG DGVSRQQFIL PGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-751718217168NO APICAL MERISTEM PROTEIN
1ut4_B1e-751718217168NO APICAL MERISTEM PROTEIN
1ut7_A1e-751718217168NO APICAL MERISTEM PROTEIN
1ut7_B1e-751718217168NO APICAL MERISTEM PROTEIN
3swm_A1e-751718220171NAC domain-containing protein 19
3swm_B1e-751718220171NAC domain-containing protein 19
3swm_C1e-751718220171NAC domain-containing protein 19
3swm_D1e-751718220171NAC domain-containing protein 19
3swp_A1e-751718220171NAC domain-containing protein 19
3swp_B1e-751718220171NAC domain-containing protein 19
3swp_C1e-751718220171NAC domain-containing protein 19
3swp_D1e-751718220171NAC domain-containing protein 19
4dul_A1e-751718217168NAC domain-containing protein 19
4dul_B1e-751718217168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699492.10.0PREDICTED: NAC transcription factor 56-like
SwissprotA0SPJ91e-108NAM2_HORVV; NAC transcription factor NAM-2
SwissprotQ9LD441e-109NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A1U8KAH40.0A0A1U8KAH4_GOSHI; NAC transcription factor 56-like
TrEMBLA0A2P5W1730.0A0A2P5W173_GOSBA; Uncharacterized protein
STRINGGorai.009G170700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-109NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]