PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1658
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 83aa    MW: 9612.87 Da    PI: 8.9129
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1658genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-083421047
                     HHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +l+ +a   + ++   +W+  ar +g g+t +++k+++q++
      Gh_A05G1658  3 KLFENALVIYDKDtpdRWHNLARAVG-GKTVEEVKLHYQNL 42
                     6889999999998999**********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.391147IPR017884SANT domain
SuperFamilySSF466891.64E-9251IPR009057Homeodomain-like
CDDcd001671.14E-5343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
QNKLFENALV IYDKDTPDRW HNLARAVGGK TVEEVKLHYQ NLVEDIQQIE SGQVPLPPYK  60
KAGGNKGYNF MDGEQRMRNL RLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-291831593RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448275.14e-56PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB83e-30RADL1_ARATH; Protein RADIALIS-like 1
SwissprotQ1A1732e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D2QJM41e-54A0A0D2QJM4_GOSRA; Uncharacterized protein
STRINGGorai.009G201700.12e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-32RAD-like 6
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]