PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1751

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 452aa MW: 48862.2 Da PI: 10.5615

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1751	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.6	8.6e-16	374	425	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ Gh_A05G1751 374 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRKKHAEIMEMQ 425 79*****************************************999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-12	370	431	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.519	372	423	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-13	374	425	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-11	374	423	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.5E-15	374	423	No hit	No description
CDD	cd14707	1.13E-26	374	428	No hit	No description
PROSITE pattern	PS00036	0	377	392	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MKKTNQHLAL PRRPKRRPKK QPEAQIILNL KNKILMGTNM NFGSNPPPSG DCGGNKPPGN 60 NLLTRQPSIY SLTFDEFQST MGGIGKDFGS MNMDELLRNI WSAEEIQTMA SSGGVLEGNG 120 GLQRQGSLTL PRTLSQKTVD EVWKDISKEY SLGKDGIGGG GGTNNMPQRQ QTLGEMTLEE 180 FLVRAGVVRE DTQLAGKVNN GGFFGGNNTG FEIGFQQGGK GPNLMGTRIP DGGNQIGIQA 240 SNLHPNVNGV RSNQHQLAQQ HQHQQPIFPK QTGVGYGAQI PLQSGGQLGS PGIRSGMHGI 300 GDQGISNGLI QAGALQGGGM GMVGLGTGSP ANQLSSDGIG KSSGDTSSVS PVPYVFNGSM 360 RGRKYSAVEK VAERRQRRMI KNRESAARSR ARKQAYTMEL EAEVAKLKEE NQELRKKHAE 420 IMEMQKNQVI EMVDMQQGAK KRCLRRTQTG PW

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MKKTNQHLAL PRRPKRRPKK QPEAQIILNL KNKILMGTNM NFGSNPPPSG DCGGNKPPGN  60
NLLTRQPSIY SLTFDEFQST MGGIGKDFGS MNMDELLRNI WSAEEIQTMA SSGGVLEGNG  120
GLQRQGSLTL PRTLSQKTVD EVWKDISKEY SLGKDGIGGG GGTNNMPQRQ QTLGEMTLEE  180
FLVRAGVVRE DTQLAGKVNN GGFFGGNNTG FEIGFQQGGK GPNLMGTRIP DGGNQIGIQA  240
SNLHPNVNGV RSNQHQLAQQ HQHQQPIFPK QTGVGYGAQI PLQSGGQLGS PGIRSGMHGI  300
GDQGISNGLI QAGALQGGGM GMVGLGTGSP ANQLSSDGIG KSSGDTSSVS PVPYVFNGSM  360
RGRKYSAVEK VAERRQRRMI KNRESAARSR ARKQAYTMEL EAEVAKLKEE NQELRKKHAE  420
IMEMQKNQVI EMVDMQQGAK KRCLRRTQTG PW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	19	RRPKRRPKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.24847	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749293.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-138	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U8PG85	0.0	A0A1U8PG85_GOSHI; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	Gorai.009G212600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-113	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]