PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G1766

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 277aa MW: 31177 Da PI: 7.2185

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G1766	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.9	1.8e-27	28	161	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppG+rF P++eel+++yL+ k ++ +++i+e+++y++eP+dLp+ + + ++ ++F+ +++k g r +r +k g+W++ gk Gh_A05G1766 28 PPGCRFYPSEEELLNHYLTGKNNSFAadgadAYGSDFIRELNLYDYEPSDLPEgacfvhGY--KGRRRHWFCYTKSK---GGRGRRRAKGGVWRKIGK 120 9****************998877744443333458***********556664322..44556667766554...6788888899**** PP NAM 89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++v++ ++ + g+++ +vfy+ + + +++t W+m ey+l Gh_A05G1766 121 VRDVFDGGNVKLGTRTKFVFYEMnSVKAAVRTPWIMYEYAL 161 **99999******762566678*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-33	24	177	IPR003441	NAC domain
PROSITE profile	PS51005	34.63	27	177	IPR003441	NAC domain
Pfam	PF02365	1.6E-16	28	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MSNNQNSNLP LIDIGGGSSR TSSPYHFPPG CRFYPSEEEL LNHYLTGKNN SFAADGADAY 60 GSDFIRELNL YDYEPSDLPE GACFVHGYKG RRRHWFCYTK SKGGRGRRRA KGGVWRKIGK 120 VRDVFDGGNV KLGTRTKFVF YEMNSVKAAV RTPWIMYEYA LLHRHKASFV LCRVFIKSRA 180 RNSVSENVLS CAEETVSAIQ HVGIQHVGFL RRDTLEAEIN GDDFTKELDD PITTRPVSVA 240 SFEFPSGIPD NMVGPRLTTS ELLSIVDEDF IELDDLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-15	27	178	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-15	27	178	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-15	27	178	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-15	27	178	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	9e-15	27	178	20	169	NAC domain-containing protein 19
3swm_B	9e-15	27	178	20	169	NAC domain-containing protein 19
3swm_C	9e-15	27	178	20	169	NAC domain-containing protein 19
3swm_D	9e-15	27	178	20	169	NAC domain-containing protein 19
3swp_A	9e-15	27	178	20	169	NAC domain-containing protein 19
3swp_B	9e-15	27	178	20	169	NAC domain-containing protein 19
3swp_C	9e-15	27	178	20	169	NAC domain-containing protein 19
3swp_D	9e-15	27	178	20	169	NAC domain-containing protein 19
4dul_A	9e-15	27	178	17	166	NAC domain-containing protein 19
4dul_B	9e-15	27	178	17	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749309.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Refseq	XP_016749310.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A1U8PGI1	0.0	A0A1U8PGI1_GOSHI; protein CUP-SHAPED COTYLEDON 3-like
STRING	Gorai.009G214000.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17192	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-15	NAC family protein