PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1856
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25508 Da    PI: 8.6598
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1856genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.13.1e-131061362656
                  -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                  s+++++ LA++l+L  rqV vWFqNrRa+ k
  Gh_A05G1856 106 SRKQKQALAEQLNLRPRQVEVWFQNRRARTK 136
                  899**************************98 PP
2HD-ZIP_I/II87.41.8e-281041702390
  HD-ZIP_I/II  23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    + ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e Lk+++++lkeen+rL+ke +eL+ +
  Gh_A05G1856 104 VCSRKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDRELLKKCCETLKEENKRLHKELQELK-S 170
                  44679************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001188142IPR001356Homeobox domain
SuperFamilySSF466892.84E-11103139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-12104136IPR009057Homeodomain-like
PfamPF000461.1E-10105136IPR001356Homeobox domain
PROSITE profilePS5007112.908106138IPR001356Homeobox domain
CDDcd000862.43E-9106139No hitNo description
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
SMARTSM003401.1E-18138181IPR003106Leucine zipper, homeobox-associated
PfamPF021838.5E-7138171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGLDDICNTG LCLGLGIGCL VKQENISQSD HHQQKKKKPF LKHDQLFPSL SLGPSHDVHG  60
QGESIDLHQR QASSLSLSAV SSFSNSSVKR ERDFGGEEVE LERVCSRKQK QALAEQLNLR  120
PRQVEVWFQN RRARTKLKQT EVDRELLKKC CETLKEENKR LHKELQELKS LKLTASYYMH  180
LPAATLTLCP SCERVDNGGE APSTSSPFTM GKKSHFFSSF THPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748990.11e-147PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_017605418.11e-147PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_017605431.11e-147PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-58HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2TPA11e-163A0A0D2TPA1_GOSRA; Uncharacterized protein
STRINGGorai.009G223100.11e-163(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2233535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-53HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]