PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2019
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 2158aa    MW: 236027 Da    PI: 9.0065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2019genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-0620132034627
                   -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                   C++f +tG C+ G++Ck +H++
  Gh_A05G2019 2013 CPNFEATGSCPLGSTCKLHHPK 2034
                   *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.15919041932IPR000571Zinc finger, CCCH-type
SMARTSM003560.01519051931IPR000571Zinc finger, CCCH-type
SMARTSM003565.819331956IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.86919361957IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-419581983IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.49319581984IPR000571Zinc finger, CCCH-type
SMARTSM003561.119852011IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.6919852006IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.00520072035IPR000571Zinc finger, CCCH-type
SMARTSM003560.4120122034IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-420132034IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2158 aa     Download sequence    Send to blast
MDPPSYIHHH HHNHNHHANH PRYVPFSPTA PLHPHRPPPQ PLPPYQQSPT NLHPSRHHLP  60
PQIRPPPPPP PLPQQNQQQT YQPLPAPPPP LPRQQYSNHP PYNPHHPQYS SSSNFISNPK  120
ATHVSHQFHD VPQRRLPEFD TRPDYWPENR VPRPHPVSNL DREALYHQFD RRPASPVIDR  180
FMHDLEGTSR FRDLELNQRE REGRVHNDRW ISDRSSRDFG IVSIGFESNS NNSRFDHEAT  240
ENIRWGSRLR EPLIESGNDE INERDEMRVF SRKNDYCDPE AERFSDKGSG REGNHEFNRT  300
PRKQIQKKSA LLRIQKVKPS HRSREDERSH YLGYHNEGKT GTFRGKDSVL QSDHGMDEKK  360
REGTPVELDV SFKSNSLVAK AIVTSSPAPN FDSNLMPRNT KIRKLTTFDI VSSSAQPNKG  420
SESTAKLGGS TSAVKSGSGS VDSKQSEGKI KSSDTGKAQD GIRKPCSKGT KVFLRKGKVK  480
KSPKVTVTED APNSDKKLRP LEGKGIIPCI GSKGDGGVET SSSSVNISVG ENKVGGTVKS  540
TVSDKTTASV GKSSSLKANK KKIIVRKVVK KVVSSPSNLG NSELAKKGDQ LVKTDISIQR  600
ASATPVAEKC VLPLKMKVAS ASGDSVQGVD SECSPQESAL ILEDDKVNEA SKGTGSKKVS  660
TDVDPGSSVF PKIKRKRNIS TVALNSSSQG ETNVDQGSTN AGNSVPGLHI ISNIKVDHTE  720
KPNETITSGS FGVEDLNTRF YHNENNINYG LSRSEDIKAH GGIVDIGSSS VAMPISTGFD  780
CGSSSSLEKN IVCDIGDANS GSRHVCTTPS SPVVEDRANG GLPEANCSVG SDKMPLLPCM  840
EETYVSSGSI YGDCFNHDKS TTSTPDIVYV NTGERNHEIG HDLVLSLGFS GTGIPNAVES  900
VECRDKYAAN IHKRKVGISE LDLSSSALAS ISVGSADVLT SANCVDSTIC ASEIDLNPAE  960
PMVGAIGLLD VGLRHSRDKD SILQGSSSNN TFPEIGGSAD GKSPEKKKRK ISTSSSSLTS  1020
PVIRKSVVVS DIFKSAAQIP SNFTDDLLQL EPEVKVSSTV KVSSTDDLHA EGIDLLHVNG  1080
SAAGPSEDVG SFSDACRGNP PKIDPSAFAE SVAPSSPCFH PLELGGEQFS TGTPVSAISN  1140
HQSDAMDIEG DDRGKVLVDT SEERNIISSE VTQCRIIPEH VSFGLDKRLN GIDADDDNHL  1200
PLKDDLPSTS NSLISVVDAN EVSATNSNDE AMPAPDILCD VGSLSNLVLS TSTCKGHLFN  1260
SEEKTYDNET LSYDEPVIEG SCNSSAHVSD PQHSKTILKS NDVIQTNQSS AGKAGLLPSY  1320
DSESTISLNF LSGETQGRKP QLSHVVPKSY PTRSSFVSSA SKNATSSTKI TKPRTWHRTD  1380
NSSAYPLSGN KPSLSANPMR RQMPTYIRKG NSLVRKPTPV PARPLGSHSL SSSVYRLKSG  1440
IVDEVKKGTG PNNRADAVDL RTAGANTIFE RPTTPPLSIV TKVPKHISNS SGECTSSPLA  1500
EPSASDFNET TTNRPSSMEI NDELKSPEDG PKTLETLNRN GSACLEVLNE QNESGLVPSN  1560
EKRVTYVKPK SNQLVATADS DHTSIVDVDK NQSLSASSDG YYKKRKNQLI RTALESHMKQ  1620
AVTSSDDISN SVREIAAKVI SSRTFGKRRS NKVVAKTHKP SKFSLVWTPH SARLSNNDGS  1680
SLCYPKVRPQ LFPWKRMAHK RSFKLNSVSS YSSSLSTIGR KMLLLRKRNT VYTRSINGFS  1740
IHKSKVLSVG GSSLKWSKSI ERHSRKANEE ATLAVAEAER KKREQNGNVS RTGKKGLSCH  1800
KVHGTEVRRG ERIFRIGSVR YKMDSSRRSL QRISDDASSC SASQQSENST KTSYVPRRLV  1860
IGNDEYVRIG NGNQLVRDPK KRTRVLASEK VRWSLHTARL RLVKKRKYCQ FFTRFGKCNK  1920
DDGKCPYIHD PSKISVCTKF LKGLCSNPNC KLTHKVIPER MPDCSYFLQG LCTNENCPYR  1980
HVHVNPNAST CEGFLRGYCA DGNECRKKHS YVCPNFEATG SCPLGSTCKL HHPKNRSKAK  2040
KSKRSMEHNT ARGRYFGIDI SEPKRMGSER QQEVLEEDNI CFDGKFSDYI SLGVSEDEVG  2100
GLHQANCDET SFGDNDSTVL QSEDLDELIK PIRIMSECKI TESFLVTESS SGKHLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C1e-191909203441168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C1e-191909203441168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.262030.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3939351e-133GQ393935.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0900 SSR marker CGR6091 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752217.10.0PREDICTED: uncharacterized protein At1g21580-like isoform X2
TrEMBLA0A1U8PM070.0A0A1U8PM07_GOSHI; uncharacterized protein At1g21580-like isoform X2
STRINGGorai.009G249000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012