PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2120

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 260aa MW: 29092 Da PI: 9.5003

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2120	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G g+W++ ++ g+ R++k+c++rw +yl Gh_A05G2120 14 KGAWTKEEDQRLIHYIRVHGEGSWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.4	6.9e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Gh_A05G2120 67 RGNFTEDEDELIIKLHGLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.256	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.03E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.22E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.452	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.15E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIHYIR VHGEGSWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TEDEDELIIK LHGLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLVSRG 120 IDPQSHRPLN GTAKATPTEL DLRNAPTVPK IKPITTATPS LSFKYDESQV KAKSDSLEGG 180 NCTSSGMTTD EEQPSSRPNE LNLELSIGFS TNSANSAESK PKVAKRKAVC LCWQLGFQRS 240 EICSNCENTN GLFRYCTTLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9272	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX581833	1e-130	JX581833.1 Gossypium hirsutum clone NBRI_GE14555 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016751105.1	0.0	PREDICTED: myb-related protein 330-like
Swissprot	P81395	1e-95	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A1U8PIU4	0.0	A0A1U8PIU4_GOSHI; myb-related protein 330-like
STRING	Gorai.009G263200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-95	myb domain protein 3

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]