PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2342
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 281aa    MW: 31666.5 Da    PI: 8.9541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2342genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+d++++ G g+W++ ++  g+ R++k+c++rw +yl
      Gh_A05G2342 14 KGTWTKEEDQRLIDYIRLRGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     799*****************************99************97 PP
2Myb_DNA-binding55.61.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
      Gh_A05G2342  67 RGNFSEAEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.261961IPR017930Myb domain
SMARTSM007172.0E-111363IPR001005SANT/Myb domain
SuperFamilySSF466895.03E-2813108IPR009057Homeodomain-like
PfamPF002494.0E-141461IPR001005SANT/Myb domain
CDDcd001675.45E-91661No hitNo description
PROSITE profilePS5129428.45262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2865117IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.1E-1667111IPR001005SANT/Myb domain
CDDcd001673.93E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGTWTKE EDQRLIDYIR LRGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SEAEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHGPLN QPTNTNKSTE LDFRNVPKAS KSNFAPNPSR DFNFNEFQVK AKAESIEEGN  180
SSSSGMTTDE EQQQQQQQED KYAGNSQELD LELSIGISSS GKNNNSTGVS TANSAESKPL  240
LDKSNFQFLG QAMAAKAVCL CWQLGFGTSE ICRNCQKYKW V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.12360.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4217960.0EF421796.1 Gossypium hirsutum MYB10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748490.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ388515e-95MYB6_ARATH; Transcription repressor MYB6
TrEMBLB1N7Z70.0B1N7Z7_GOSHI; MYB10
STRINGGorai.009G288900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-86myb domain protein 6