PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2343

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 422aa MW: 44812.3 Da PI: 7.2629

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2343	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.7	6e-40	97	186	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ + Gh_A05G2343 97 PAAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTQELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTISAP--PS 186 6789*****************************************************************9997777777777743333..22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.443	103	157	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.7E-37	103	201	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MQIMESQSNK SSNSSEHHHH HHGQKQEASL QLVSRDGQPQ AAAGAAHGTS HQAQAQTQTQ 60 AQPQAPGHHV SFMGSISNQI GVPSSSPTST SSLAKPPAAK RPTKDRHTKV DGRGRRIRMP 120 AVCAARVFQL TQELGHKSDG ETIEWLLQQA EPAIIAATGT GTIPANFSTL NVSLRSSGST 180 ISAPPSKSAP LSFHSALGFY NSNGDEARRI GNSTAMLGFH HQLYPQLLNP ETHIRSGGNP 240 NDNYATKPFR DDLFKETSQH NTETGAIDAN SPKPERTGMP EQEPGLFQTT NVMPAPAMWA 300 VAPATTNGGN AFWMLPVGGG ATAASATVPE AQMWTFPAHY SGGGRGNPVQ LGSMILQQQQ 360 AGGQQLGLGV TETNMGLLGS GMNVYSNNNR VGLKMNLEQQ HHHENQTQGS DSGDENPATD 420 SQ

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MQIMESQSNK SSNSSEHHHH HHGQKQEASL QLVSRDGQPQ AAAGAAHGTS HQAQAQTQTQ  60
AQPQAPGHHV SFMGSISNQI GVPSSSPTST SSLAKPPAAK RPTKDRHTKV DGRGRRIRMP  120
AVCAARVFQL TQELGHKSDG ETIEWLLQQA EPAIIAATGT GTIPANFSTL NVSLRSSGST  180
ISAPPSKSAP LSFHSALGFY NSNGDEARRI GNSTAMLGFH HQLYPQLLNP ETHIRSGGNP  240
NDNYATKPFR DDLFKETSQH NTETGAIDAN SPKPERTGMP EQEPGLFQTT NVMPAPAMWA  300
VAPATTNGGN AFWMLPVGGG ATAASATVPE AQMWTFPAHY SGGGRGNPVQ LGSMILQQQQ  360
AGGQQLGLGV TETNMGLLGS GMNVYSNNNR VGLKMNLEQQ HHHENQTQGS DSGDENPATD  420
SQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.10269	0.0	boll\| ovule\| stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ525279	1e-153	HQ525279.1 Gossypium herbaceum clone NBRI_A2_462 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748489.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	2e-83	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A1U8PDY0	0.0	A0A1U8PDY0_GOSHI; transcription factor TCP23-like
STRING	Gorai.009G289000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	6e-69	TCP family protein