PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2447

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 248aa MW: 27848.5 Da PI: 9.8328

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2447	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.9	6.2e-15	178	226	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ +el+k Gh_A05G2447 178 RRQKRMIKNRESAARSRARKQAYTNELENKVLRLEEENERLRKR-KELEK 226 79****************************************65.55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.6E-15	168	226	No hit	No description
SMART	SM00338	4.1E-12	174	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	176	221	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-12	178	223	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.91E-22	178	232	No hit	No description
SuperFamily	SSF57959	5.0E-10	178	223	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MYGTMLTNQA SLQRQASLSL TGALSKKTVD EVWRDIQQSK NDGEKKSRER QPTLGEMTLE 60 DFLVKAGVVA EASTDGDAGA SIAGVDLSVA PQFAQQGQWM QYPQPQYHHP QQSIMGVYMP 120 SQPMPRPLDL GTAAVMDVSY PENQVPLHSP LMGTLSDTQA SGRKRGASED IVEKNVERRQ 180 KRMIKNRESA ARSRARKQAY TNELENKVLR LEEENERLRK RKELEKLLPS APPPEPKYQL 240 RRTSSAPF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017650197.1	1e-179	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017650198.1	1e-179	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017650199.1	1e-179	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017650200.1	1e-179	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	7e-77	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0B0MB10	1e-177	A0A0B0MB10_GOSAR; Abscisic acid-insensitive 5-like protein 2
STRING	Gorai.009G301200.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-55	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]