PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2509
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 462aa    MW: 51417.5 Da    PI: 5.3804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2509genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53331601128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv++yLk+kv++k+ ++ ++i+evdiyk+ePw+L   +k+k++++ewyfFs  dkky +g r nrat +gyWkatgkd+ev + +
  Gh_A05G2509  33 LAPGFRFHPTDEELVSYYLKRKVTNKPARF-DAIAEVDIYKHEPWNLSdkSKLKTRDQEWYFFSLLDKKYGNGGRMNRATGQGYWKATGKDREVRH-N 128
                  579************************999.99**************85348889999**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++l+g+kktLvf++g+ap+g +t+Wvmheyrl
  Gh_A05G2509 129 SQLIGMKKTLVFHSGKAPDGLRTNWVMHEYRL 160
                  9*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6029182IPR003441NAC domain
PROSITE profilePS5100556.99233182IPR003441NAC domain
PfamPF023651.0E-2735160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGRETSLVAD PGPTAVATAT ATAAKTGSSA TALAPGFRFH PTDEELVSYY LKRKVTNKPA  60
RFDAIAEVDI YKHEPWNLSD KSKLKTRDQE WYFFSLLDKK YGNGGRMNRA TGQGYWKATG  120
KDREVRHNSQ LIGMKKTLVF HSGKAPDGLR TNWVMHEYRL IEEELERIGA LQGYVLCRVI  180
HKNNIGPPNG NRYAPFIEAE WDDGSAALVP GLDTEDDVAA GNDSIATNDV AATENAATES  240
NGVLRISSEQ EDIEHPDEDA PPSADVPRES PNERTDDCTL LPPCKIERSD DCPPLCMPNR  300
EAPLSLFGHK RRRHNDFGPN HANVTENSTR NVTENSTRMT QDRWSSTTTT TTTTPPPPSS  360
ATTMAVSALL EFSLMESMEP KENLHVPPTP KYNATTILNS MVPPSCMKLI NDLQKEIHNT  420
SIERETLKLE MMSAQTMIDI LQSKIDFLSK ENEDLKKSNR DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-473218419170NAC domain-containing protein 19
3swm_B7e-473218419170NAC domain-containing protein 19
3swm_C7e-473218419170NAC domain-containing protein 19
3swm_D7e-473218419170NAC domain-containing protein 19
3swp_A7e-473218419170NAC domain-containing protein 19
3swp_B7e-473218419170NAC domain-containing protein 19
3swp_C7e-473218419170NAC domain-containing protein 19
3swp_D7e-473218419170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.57600.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472461e-170KC847246.1 Gossypium hirsutum NAC domain protein NAC69 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748429.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9SQX91e-146NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A1U8PDS50.0A0A1U8PDS5_GOSHI; NAC domain-containing protein 86-like
STRINGGorai.009G309300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17802880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-134NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]