PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2599
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 317aa    MW: 34701.7 Da    PI: 8.6665
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2599genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-3866125362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   +alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r++k+s+
  Gh_A05G2599  66 ASALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRDKRSK 125
                  6789****************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3049114IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3268123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.44169123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVFSSLPSYL DPPNWQQPPF LQQPGVITSE NHHNSQLPPS AGGGAGGIRP GSMVERARLA  60
KIPHPASALK CPRCESTNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR NVPVGGGCRR  120
DKRSKGRKRS KSPSVTSERQ TGSSSSATTI NSNGCTEMLS HVNPAAAPQL PPLAPLHHLG  180
DYNSGDIEVA FGDETRIMSS NGIGLMLPDW RSAQQVQQFP FLTSLDHPQT GLYSFVNETM  240
EPTGYAGQQQ QLGSKPLEST ITESSAVKME ETPSPWLNPS RNFLGNSGND DQYWFFGGGN  300
PWTDLSGFTS SSITHFF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678204.10.0PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBLA0A1U8IQQ70.0A0A1U8IQQ7_GOSHI; dof zinc finger protein DOF3.6-like isoform X1
STRINGGorai.009G319300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.23e-43OBF-binding protein 3