PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2664
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 416aa    MW: 46277.4 Da    PI: 8.186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2664genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-065880123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  Gh_A05G2664 58 YVCEICSQGFQRDQNLQMHRRRH 80
                 9*********************9 PP
2zf-C2H210.70.0017165183523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr +++  H+ ++
  Gh_A05G2664 165 DCGRVFSRVESFIEHQDSC 183
                  9**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.17E-55581No hitNo description
Gene3DG3DSA:3.30.160.605.8E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9075880IPR007087Zinc finger, C2H2
SMARTSM003550.0115880IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359060140IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035521099129IPR015880Zinc finger, C2H2-like
SMARTSM00355130135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLGYTTSASA LPSSSSDPLS PLENGVTQKR KRKPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICSQGFQRD QNLQMHRRRH KVPWKLLKRE NQEVKKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS KQKQWVCDKC CKGYAVQSDF KAHLKICGTR GHSCDCGRVF SRVESFIEHQ  180
DSCSARRIQP ELLTAVLPSC SSRTAPSASP SSDTNLNFSI APTGTPLLGL PMPRSTEPVF  240
LYSQAPTLDH LRHHRLLQHD LELQLLPSSS AHSTWWNSDE NENRATNLKL SIGSSESVEN  300
IEANTLANAT ETALEALKEL AIAEKTYAEK ARLEAKRQIE MAELEFSSAK RIRQQAQSEL  360
EKAQALKDEA TKKINAIIMK ITCGACKHQF RAATADDETS LAMSYMSSAT TEGEGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-16132185457Zinc finger protein JACKDAW
5b3h_F3e-16132185457Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}.
UniprotTISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748154.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-158IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A1U8PCZ80.0A0A1U8PCZ8_GOSHI; protein SHOOT GRAVITROPISM 5-like
STRINGGorai.009G329200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-119indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]