PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2666
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 300aa    MW: 33964.8 Da    PI: 8.709
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2666genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.3e-322073255
      G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 prlrWtp+LH++F++a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Gh_A05G2666 20 PRLRWTPQLHHCFLHAIDRLGGQHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7511676IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-301676IPR009057Homeodomain-like
SuperFamilySSF466893.94E-151875IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-232073IPR006447Myb domain, plants
PfamPF002491.3E-72172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRCGRHNGA VRQYIRSKVP RLRWTPQLHH CFLHAIDRLG GQHKATPKLV LQLMDVKGLT  60
ISHVKSHLQM YRSMRSDYGR QVTSSTHERR QSFDDNHGFD GCVVPIEESC SHLIYNNRFP  120
PKRHGIFETR VSNTCSFDDY KQTMDARKRI KQDNGDYVWD QTINYSHSLG QPLALFLPHD  180
LYSLNAFRSY SLATKVEVED PKRAHEQDAK LIERNIRSQE EDDGGGGGCE LSLSLSLQYH  240
NTSSTSETSS SEAFSSYLRS NYKDCWGSSS TSTFSSSSSS SSVTRRSAIN LDLSIALCGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.194210.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747001.10.0PREDICTED: putative Myb family transcription factor At1g14600
RefseqXP_016747002.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA0A1U8P7040.0A0A1U8P704_GOSHI; putative Myb family transcription factor At1g14600
STRINGGorai.009G329400.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.15e-36G2-like family protein