PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2888
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 248aa    MW: 28059.5 Da    PI: 6.7712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2888genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-104472331
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkas 31
                 ++h+++E+rRRdriN  ++ Lrel+P + 
  Gh_A05G2888 44 TSHSQAEKRRRDRINAQLSALRELIPMSH 72
                 68************************962 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.8044191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-84278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-84473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-54475No hitNo description
Gene3DG3DSA:4.10.280.101.3E-94477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00589118153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENYYKSSSR TDFSDKVSND SSFIVPWTIP VEEIAEDKAT TVYTSHSQAE KRRRDRINAQ  60
LSALRELIPM SHKKSAKAFN IPTEMDEVTV DWDRPQDINP NGTRQGNDSK DKIFIRASVC  120
CDDRPEVFTE LIKILKGLRL NTIKADISSV GGRMKCNFIL CYNSIDEEEE EGEGVSPTTL  180
KQSLDVVLSR IASSSDVSDC RIRSKRQSFT LEYLIQSIAT RSYPRKDSSF SKNLIGEHSL  240
TNRGTVTN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164450.0JX616445.1 Gossypium hirsutum clone NBRI_GE61128 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614715.11e-135PREDICTED: transcription factor bHLH51-like
TrEMBLA0A2P5WLC41e-144A0A2P5WLC4_GOSBA; Uncharacterized protein
STRINGGorai.012G078100.13e-84(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-34bHLH family protein