PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2921
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 421aa    MW: 47445.2 Da    PI: 5.523
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2921genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-071656337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 +  C  +++k++ l+C  ++  lC  C ++ H+       H
  Gh_A05G2921 16 MSLCHFCKSKPAVLYCSADSARLCLFCDQQVHSAnalslkH 56
                 678*****************************655666666 PP
2zf-B_box21.35.7e-075992336
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                  ++C+ ++ k++++ C  ++ +lC+dC  ++H++
  Gh_A05G2921 59 SQICDGCKAKPASFLCSIDNLMLCHDCDWSSHSN 92
                 689*****************************76 PP
3CCT62.51.3e-21371415145
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  R++a+lRYkeK+k+R+++K+irYesRK++A++R+R KGrFvk++e
  Gh_A05G2921 371 RDNAMLRYKEKKKHRRYDKQIRYESRKTRADTRKRFKGRFVKASE 415
                  899***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7551461IPR000315B-box-type zinc finger
SMARTSM003361.8E-91461IPR000315B-box-type zinc finger
PfamPF006436.7E-61658IPR000315B-box-type zinc finger
CDDcd000214.22E-61849No hitNo description
PROSITE profilePS501199.39957113IPR000315B-box-type zinc finger
CDDcd000213.79E-46187No hitNo description
SMARTSM003360.562113IPR000315B-box-type zinc finger
PROSITE profilePS5101714.733371413IPR010402CCT domain
PfamPF062031.1E-15371413IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMMSRVPKPK PRRSTMSLCH FCKSKPAVLY CSADSARLCL FCDQQVHSAN ALSLKHVRSQ  60
ICDGCKAKPA SFLCSIDNLM LCHDCDWSSH SNNNSSSSSS SSCVSAMHER APVEGFSGRP  120
SVVELASLFG FDLKPKDLMN LIPGFSLYER ELMNLEDFMV PDEENSCVSS ALISSVKLDH  180
EVYRQLVDMG KRGLVRGSGD GAELGPGTPP ITSAEQENFA SFEVENGYDE EQLQQQTPFT  240
SLLTFQSDDV LRQNDYVAEG ELVWDCKSSY LPSQIWDFQS ERSKDCEESG AEDAGFVKGW  300
SFFRNNTCNE AFSSYKPTTE ESNNVVESLE TPICDSTRYV QVMEHPIVGG SEVMNYEAKP  360
NVDIEPLAQN RDNAMLRYKE KKKHRRYDKQ IRYESRKTRA DTRKRFKGRF VKASEAPDVR  420
V
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3936023e-65GQ393602.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0567 SSR marker CGR5610 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738566.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1U8NHT90.0A0A1U8NHT9_GOSHI; zinc finger protein CONSTANS-LIKE 14-like
STRINGGorai.012G083100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1922677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-70B-box type zinc finger protein with CCT domain