PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G2928
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 206aa    MW: 23401.7 Da    PI: 9.7575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G2928genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.6e-3231191128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  +p GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++Pw+Lp +v   +++ yfFs+r +            + gyWk  g++k+++++ ++
  Gh_A05G2928   3 MPIGFRFHPTDEELVVHYLKRKALSLPLPA-SVISEFDVLGTHPWSLPGEV---NEKRYFFSSRGRDGG--------GSGGYWKPIGREKPIIETgSN 88 
                  699***************************.99***************554...4578*****988654........368*************99677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  e+vg+++tL+f   + ++ ++t+W++h+yrl
  Gh_A05G2928  89 EVVGMRRTLIFCGRKPSNHTNTRWFLHQYRL 119
                  78**********77888899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-412144IPR003441NAC domain
PROSITE profilePS5100540.8243144IPR003441NAC domain
PfamPF023654.4E-204119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKMPIGFRFH PTDEELVVHY LKRKALSLPL PASVISEFDV LGTHPWSLPG EVNEKRYFFS  60
SRGRDGGGSG GYWKPIGREK PIIETGSNEV VGMRRTLIFC GRKPSNHTNT RWFLHQYRLL  120
HSNSTQMVKR EMAGDWLVFR VFQRKRKARK HAAKMATCID FTAEDCPVFN PPPQSTSPSS  180
SEITEVSPNG LDEEESSAFI TSCIRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-25115013174Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142149QRKRKARK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.221100.0ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472370.0KC847237.1 Gossypium hirsutum NAC domain protein NAC60 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738557.11e-154PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8NHH91e-153A0A1U8NHH9_GOSHI; NAC domain-containing protein 83-like
TrEMBLA0A2P5YUL71e-153A0A2P5YUL7_GOSBA; Uncharacterized protein
STRINGGorai.012G083700.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-38NAC domain containing protein 83