PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3322
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 202aa    MW: 23475.7 Da    PI: 5.5766
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3322genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.24.2e-33121291128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrF Ptdeelv ++L +k  + ++   ++i+e+d+++++Pw+L+ k+   + + yfFs++         +nr+ ++gyWk+   +++++s ++ 
  Gh_A05G3322  12 LPPGFRFCPTDEELVLHFLYPKSLRLPCYS-NIIPELDLHRLHPWELDGKAL-MSGKRYFFSQKM--------ENRVLENGYWKQLEMEEPIFSGGSG 99 
                  79*************************988.89**************94432.34578***9974........589*******************9** PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg+kk + fy g ap g kt+Wvm+ey+l
  Gh_A05G3322 100 KVGVKKLFEFYIGGAPFGMKTNWVMQEYHL 129
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-417159IPR003441NAC domain
PROSITE profilePS5100538.86112162IPR003441NAC domain
PfamPF023652.2E-2113129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEMEDGRRVN HLPPGFRFCP TDEELVLHFL YPKSLRLPCY SNIIPELDLH RLHPWELDGK  60
ALMSGKRYFF SQKMENRVLE NGYWKQLEME EPIFSGGSGK VGVKKLFEFY IGGAPFGMKT  120
NWVMQEYHLC NWGSAFSSHY PKTKGIRKLD SNKWVICKVE EHKGNAQSFN YSDEDGSELS  180
CLDEMFLSLD DDLDDISSSH FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-301216717170NO APICAL MERISTEM PROTEIN
1ut4_B8e-301216717170NO APICAL MERISTEM PROTEIN
1ut7_A8e-301216717170NO APICAL MERISTEM PROTEIN
1ut7_B8e-301216717170NO APICAL MERISTEM PROTEIN
3swm_A8e-301216720173NAC domain-containing protein 19
3swm_B8e-301216720173NAC domain-containing protein 19
3swm_C8e-301216720173NAC domain-containing protein 19
3swm_D8e-301216720173NAC domain-containing protein 19
3swp_A8e-301216720173NAC domain-containing protein 19
3swp_B8e-301216720173NAC domain-containing protein 19
3swp_C8e-301216720173NAC domain-containing protein 19
3swp_D8e-301216720173NAC domain-containing protein 19
4dul_A8e-301216717170NAC domain-containing protein 19
4dul_B8e-301216717170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5789701e-90JX578970.1 Gossypium hirsutum clone NBRI_GE11114 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753058.11e-150PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1U8PRU01e-149A0A1U8PRU0_GOSHI; NAC domain-containing protein 104-like
STRINGGorai.012G036100.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-41xylem NAC domain 1