PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G3854

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 230aa MW: 26807.3 Da PI: 4.9439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G3854	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.1	2.2e-13	159	229	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr 71 Wt++e+ +L++a + + +r++l+ W+ev++k+++ + er+ +qC+++++ l+k+ykk+k++ +++ Gh_A05G3854 159 WTEHETFVLLDAWGDCFLQRGRKSLRSEEWQEVAEKVSKVSMiERTDTQCRNRLDTLKKKYKKEKAMLQRH 229 ***********************************777666*********************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.0E-18	158	226	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.8E-5	159	223	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.156	159	216	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDDIEDDARY PPNQYGVSHQ RCYGSLSRRK LPVRNLPYSR SMGNQDVNDD EVEDEEDFRR 60 EAKNREQNNV AWYIGKNIDN EDDDELDDGE EEDDDDGSDK PKGYNENSND VDLERHPKKR 120 KLKNLLSSYE FAPRVPAPAA AASSMPKPSH GGRNSLTDWT EHETFVLLDA WGDCFLQRGR 180 KSLRSEEWQE VAEKVSKVSM IERTDTQCRN RLDTLKKKYK KEKAMLQRHH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016733620.1	1e-146	PREDICTED: probable DNA-directed RNA polymerase subunit delta, partial
TrEMBL	A0A1U8N3P1	1e-145	A0A1U8N3P1_GOSHI; probable DNA-directed RNA polymerase subunit delta
STRING	Gorai.009G133300.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28180	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-18	Trihelix family protein