PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3887
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 461aa    MW: 49262.6 Da    PI: 4.7538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3887genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31241299259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Gh_A05G3887 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 299
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31234301IPR003657WRKY domain
PROSITE profilePS5081133.109235301IPR003657WRKY domain
SuperFamilySSF1182903.01E-26238301IPR003657WRKY domain
SMARTSM007741.4E-37240300IPR003657WRKY domain
PfamPF031069.9E-26242299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MFVSLHMDNY QGEGDLNDIV RASGGGPLSC ATGHGSNTVP ASSWQQFPSD PLNFPSSAME  60
DHGLNAFGDP FSAMRDPLLQ ELDVAAGCSA YFSSPNSTDH IINTTSSATV EADTCNFSGS  120
STMVGQGKLF EGDMPSPCNI FSRIQISASS SKLPVLPCDS PMIAACVSPR GIKAPAVLPS  180
DMINANTSKS CLIDSTGPLQ ISSPRNLGIK RRLGKSQVKK VVCIPAPAAA NSRSSGEVVP  240
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW  300
PTQRNALAGS TRSQPSKNNN NAAAASKITS PRSQTQNAVS PKEEDLKESS NDALSPTVGA  360
VNSTASASAK GESEDMEKQL EIDDAEFGEG IPETYRPALM AGDSQQPEDF FAELDEIETD  420
PLNLLFPQGF GGGDQDEQKE KKTMDPFGLF DWPPGNNDAS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-26215302280Disease resistance protein RRS1
5w3x_D2e-26215302280Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.235970.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384580.0KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602885.10.0PREDICTED: probable WRKY transcription factor 35 isoform X1
TrEMBLA0A1U8JEN90.0A0A1U8JEN9_GOSHI; probable WRKY transcription factor 14 isoform X1
STRINGGorai.009G116800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-102WRKY DNA-binding protein 14