PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3903
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 262aa    MW: 29175.3 Da    PI: 8.2714
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3903genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.32.2e-403596263
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                 +e+alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Gh_A05G3903 35 HEQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96
                 7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-282388IPR003851Zinc finger, Dof-type
PfamPF027012.6E-343793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4693993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDPSTRQHQE MANPSMENMS VNSKGQQERK PRPQHEQALK CPRCDSINTK FCYYNNYSLS  60
QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSSS SSKRSQDQPL LTSNSTNPLI  120
SGHLPPLNYD TNDLSLAFAR LQKQSGFPLG FDDFGNPSLN GCTSSTSPPN PAIVDALRSS  180
FLGNQNNLQN FYYGFGNENM GEVEDMGFNG ELMVPYHNEE MSNASTVTTM KQELSIADFD  240
SGRGTWNGFN SSWHGLLNSP LM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.126090.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3515470.0AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750751.10.0PREDICTED: dof zinc finger protein DOF2.1
TrEMBLA0A1U8PHQ80.0A0A1U8PHQ8_GOSHI; dof zinc finger protein DOF2.1
STRINGGorai.009G079400.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.14e-39Dof family protein