PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3994
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 509aa    MW: 56961.3 Da    PI: 5.8725
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3994genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.32.2e-20220275155
      G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+rl+W+ eL ++Fv+av+ L  Gse+  Pk+il++m+ +gL+++h+ SHLQkYRl
  Gh_A05G3994 220 KKRLVWSRELDAKFVKAVQILEkGSENVHPKRILDVMNEPGLSRAHISSHLQKYRL 275
                  78*******************55********************************8 PP
2Response_reg60.31e-208318311111
                   HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HH CS
  Response_reg  11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpe 105
                   ++ l+ +l + +y +v++a+++ ea+e+l++++  +D++l+D++  ++++++++++i  e  +lp+i+vta ++ e +++ l  Ga d++ Kpf++e
   Gh_A05G3994  83 LQYLCAVLHNCNY-KVKSASSAVEAIEILRTNKhgIDIVLVDVDTADLNAFKVMETIGLET-NLPVIMVTADSNLENITKGLAHGAVDCIIKPFEME 177
                   677889999999*.***************888778**********************8777.8********************************** PP

                   HHHHHH CS
  Response_reg 106 elvkav 111
                   ++ +++
   Gh_A05G3994 178 QIKNTI 183
                   **9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001563.70E-1662186No hitNo description
SMARTSM004485.9E-1471183IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.87772187IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.5E-1582183IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.0E-2382206No hitNo description
SuperFamilySSF521722.7E-2282191IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.602.5E-21218279IPR009057Homeodomain-like
SuperFamilySSF466898.96E-14218279IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-17220275IPR006447Myb domain, plants
PfamPF002496.5E-6223274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MCRVELARLE YRILISDNGV VQPKKVAFVG SEKSPYIFLF PSSLLLNNME EIFLENLIEP  60
QIDDDHTLKE LTVFAFNTQV LSLQYLCAVL HNCNYKVKSA SSAVEAIEIL RTNKHGIDIV  120
LVDVDTADLN AFKVMETIGL ETNLPVIMVT ADSNLENITK GLAHGAVDCI IKPFEMEQIK  180
NTIQSHVASN KTRGQNLNPL PGSNARMAVK DACCSSKRKK KRLVWSRELD AKFVKAVQIL  240
EKGSENVHPK RILDVMNEPG LSRAHISSHL QKYRLALKKR KADTNKQGLE VEPTNYCLKK  300
REIGNFNADR RRLAIQSFNG VMSPSSSSPD QKKQSQSLVY SCINGHGPEF QTPDFYYNNH  360
RLETNIQPHN VESEHVSGTT TLSPYFNGVD SEPIILSSAA VYPSPNAVFL EPEANIAFHS  420
HFDVISVPNP LYGFTIDCST EVQYPSSTVL GRNSETYAVQ NGTTISPSDT SSYHYVEPEN  480
EVSGTYNSQI ECSLFEEESI DWYSLLDDQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841054e-74JX584105.1 Gossypium hirsutum clone NBRI_GE17310 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644582.10.0PREDICTED: two-component response regulator ARR18-like
TrEMBLA0A2P5WDN50.0A0A2P5WDN5_GOSBA; Uncharacterized protein
STRINGGorai.009G006200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2076546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-41response regulator 12