PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0097
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 394aa    MW: 43340.3 Da    PI: 4.6632
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0097genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.3e-133513112127
          NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy 109
                  eel    L k ++g++l++   + ev+ y+veP+ Lp      +  w+  s++dk+          +++g Wk + + +ev+s ++  +g + tLv+y
  Gh_A06G0097  35 EELF-IGLDKLTSGSPLPC--NVIEVNPYSVEPQYLP------DGIWFLISSNDKT---------DMEHGLWKVKEEAREVFS-NSDIIGWRATLVYY 113
                  5555.34667777777777..4678999999999999......2345555555443.........3578**************.999*********** PP

          NAM 110 kgrapkgektdWvmheyr 127
                  kg+ p+ +kt+Wvm+ ++
  Gh_A06G0097 114 KGQVPHEHKTNWVMQVFS 131
                  **************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
PROSITE profilePS5100518.67824155IPR003441NAC domain
SuperFamilySSF1019416.15E-1932154IPR003441NAC domain
PfamPF023653.6E-659130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASSRPTPSY SENQIIMIAS AASLSACIAI TSTNEELFIG LDKLTSGSPL PCNVIEVNPY  60
SVEPQYLPDG IWFLISSNDK TDMEHGLWKV KEEAREVFSN SDIIGWRATL VYYKGQVPHE  120
HKTNWVMQVF STTQKRLCDE NANKETISMC RVFLVPSDEM QQKVSSARIG TENHLPQPPI  180
LDANCSTGIG SSSNRQVNKH DEKEGLAVAG TIPVPEHQDE NDVEMDCFTE AHIDSFSRGD  240
FLEMNDLINH VSSSSSGNSS APSMSSDECF DSMAFLQDLD QDLVLEQNDI GKKLDVSASN  300
RLDEVVLVPA TLVSVVSIEG NDSSSNELLK TTSSVPNSAN NNEISKHATG NQRDEGPSSS  360
SSSSSVKPKS SRRKRDALGR MKELRKKYLC FMPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.51520.0boll| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272731e-129HQ527273.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IOGW8 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638695.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_017638696.10.0PREDICTED: NAC domain-containing protein 82-like
TrEMBLA0A0B0Q0G30.0A0A0B0Q0G3_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.010G012000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-14NAC domain containing protein 28