PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G0124

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 277aa MW: 30888.6 Da PI: 8.5359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G0124	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.6e-32	112	165	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gh_A06G0124 112 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 165 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-15	109	166	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-28	110	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	112	165	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	113	164	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MMRTTALPDL SLQISPPSVK EMADDGLSMK SIYSDRSSTT DSGSSGSDLS QENGYFNNPI 60 EPTLSLGFEM VHHHHHHHQH HHHQYQPQIY GRDFKRSSRT NINGAKRSIR APRMRWTTTL 120 HAHFVHAVQL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD KGSGQMQTDM 180 SLNQRSGIVD LDGRLISPQP TPQRTQSGSW LPSLEVNNLS ISSNGNGLTL HPNDAKVDGD 240 NKVLHVSNPD MLLNLEFTLG RPSFAHESSN DLTLLKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	113	167	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	113	167	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269\|PubMed:16623911}.
Uniprot	TISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269\|PubMed:15286295}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP271989	4e-82	KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640800.1	0.0	PREDICTED: probable transcription factor KAN4
Swissprot	Q9FJV5	6e-71	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A0B0PKZ0	1e-180	A0A0B0PKZ0_GOSAR; Putative transcription factor KAN4-like protein
STRING	Gorai.010G015500.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6572	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	3e-67	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]