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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A06G0194 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 159aa MW: 18301.8 Da PI: 9.2673 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 11.7 | 0.00079 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C + F ++ L H++ H
Gh_A06G0194 76 FSCNFCRRKFYSSQALGGHQNAH 98
89******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 1.29E-6 | 72 | 102 | No hit | No description |
| PROSITE profile | PS50157 | 10.97 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 159 aa Download sequence Send to blast |
MFIRHKQCPK QAIPVFIFRY QKVVEMSVNY LINEGHDDGC YEGNSMEWPD LSLGKHGDIA 60 ASKSGLRSNY ASNKIFSCNF CRRKFYSSQA LGGHQNAHKR ERGRCQSERM MPMVGLPMTR 120 SLGLQPPFTS VSTEQKTETF SCTIQQFKQR DYEGMDRIN |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016717712.1 | 1e-98 | PREDICTED: zinc finger protein 5-like | ||||
| TrEMBL | A0A1U8LT01 | 3e-97 | A0A1U8LT01_GOSHI; zinc finger protein 5-like | ||||
| STRING | Gorai.010G024000.1 | 6e-65 | (Gossypium raimondii) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G24625.1 | 8e-15 | zinc finger protein 7 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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