PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0219
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 593aa    MW: 64422.1 Da    PI: 8.8268
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0219genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24231275145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Gh_A06G0219 231 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 275
                  79****************************************985 PP
2QLQ61.42.5e-21161197137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q+++L++Q+l+yKy+++n+P+P++Ll +i+k
  Gh_A06G0219 161 GPFTPSQWMELEHQALIYKYINSNVPIPSNLLIPIRK 197
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-12161197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.027162197IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.1E-16162196IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287231275IPR014977WRC domain
PfamPF088797.6E-21232274IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDIGGVVVGL EGFVGSETVV TSSLVSDPKT KPKLYGSGFL KQERPGNNED VLLWRSSKLA  60
KTEGVSASEA MPLLLHHKNR LLRSNANAAT SVFSDGVSAS QAMLSFSSAP KSRALSLDKS  120
SQNVTFPYFH LTSPASTRNT GYNNGGFYGE NMHGVLGGDR GPFTPSQWME LEHQALIYKY  180
INSNVPIPSN LLIPIRKALG STDFSSFSGG PLRTNTLGWG AFRLGFSNNT DPEPGRCRRT  240
DGKKWRCSRD AVADQKYCER HINRGRHRSR KPVEGQSGHS AGATSTTTTK VMSTVSSTLA  300
SVVAPISGCS ESNSLTVAQQ QFKNLQPVTA PVNRLLVNKE TLGERLHEST LDLKSKENPF  360
LMPMQQLVTY EENLRNEFGV VFSDSLLNPS HKDSSLINCR TFGSSQDLIC QATVSQHSLR  420
EFMDDWPKSQ SDRSTISWPE VDVQSDMTQL SISIPMTASD FMSSTSSPSN EKLSSSPLRL  480
SREFDPMHMG LGVGSVINEP NHKQANWIPI SWKNSMGGPL GEVLHSTNSS ALNLITCDDW  540
NNSPRQRLAS SPTGVLTKTT FGSVSNSSAG SSPRPDNDLR GSTLVHTSSL PAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.159170.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5669789e-82AJ566978.1 Gossypium hirsutum microsatellite DNA mGhCIR029, clone CIR029.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717785.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1U8LTA70.0A0A1U8LTA7_GOSHI; growth-regulating factor 1-like
STRINGGorai.010G027700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-102growth-regulating factor 1