PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0358
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 481aa    MW: 53327.9 Da    PI: 6.053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0358genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.81.1e-107984781374
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal....ppsetseknsseelaalklfsevsPil 91 
                  l++lL+++Aea++ ++++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +s+ +  k l    p  + +e+++++ l+a++l++++sP++
  Gh_A06G0358  98 LIHLLMAAAEALAGDNKSreLARVILVRLKELVSPNDgTNMERLAAYFTEALQGLLEGSGGGHGKHLitngPHHHRDEHHHTDMLSAFQLLQDMSPYV 195
                  689*********998776569***********8887669******************987665555521114455555559***************** PP

         GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                  kf+h+taNqaIlea+ +++r+Hi+D+d+++G+QW++L+qaL sR++g  +p+lRiT+++++ sg  s  +++etg+rL  fA+++g pf+f+    ++
  Gh_A06G0358 196 KFGHFTANQAILEATTHDRRIHIVDYDVMEGIQWASLMQALVSRKDGpqAPHLRITAISRSGSGrrSIGTIQETGRRLVAFAASIGQPFSFHQCRLDS 293
                  *********************************************662368*********888899999************************9999* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                   e++++++L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+   +++ F+ rf+++l++ysa++dslea++p ++++r
  Gh_A06G0358 294 DETFRPSTLKLVRGEALIINCMLHLPHFSYRAPDSV---ASFLSGAKTLNPRLVTLVEEEVGPiGDGGFVGRFMDSLHHYSAVYDSLEAGFPMQNRAR 388
                  ***************************985555555...59*******************9988********************************** PP

         GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                    vEr++lg++i+  +a   +     +e+ + W+++l ++GFkpv++s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  Gh_A06G0358 389 GLVERVFLGPRITGSLARIYRT--GGEEESRGWSKWLATMGFKPVNISFANHCQAKLLLGLFN-DGYRVEELaNNRLVLGWKSRRLLSASIWT 478
                  *****************98876..888999*********************************.******97588999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.02272458IPR005202Transcription factor GRAS
PfamPF035143.7E-10598478IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAIDNAFEVD FYSNSTTTSI TDDSPACTWN HWGSPVVDWD SFSSDPDDFQ DLIESMMDDG  60
TGFELARVAH ETSNSVSTDT MVVDEETNGD EDSKGLRLIH LLMAAAEALA GDNKSRELAR  120
VILVRLKELV SPNDGTNMER LAAYFTEALQ GLLEGSGGGH GKHLITNGPH HHRDEHHHTD  180
MLSAFQLLQD MSPYVKFGHF TANQAILEAT THDRRIHIVD YDVMEGIQWA SLMQALVSRK  240
DGPQAPHLRI TAISRSGSGR RSIGTIQETG RRLVAFAASI GQPFSFHQCR LDSDETFRPS  300
TLKLVRGEAL IINCMLHLPH FSYRAPDSVA SFLSGAKTLN PRLVTLVEEE VGPIGDGGFV  360
GRFMDSLHHY SAVYDSLEAG FPMQNRARGL VERVFLGPRI TGSLARIYRT GGEEESRGWS  420
KWLATMGFKP VNISFANHCQ AKLLLGLFND GYRVEELANN RLVLGWKSRR LLSASIWTSP  480
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-60844785379Protein SCARECROW
5b3h_A1e-60844784378Protein SCARECROW
5b3h_D1e-60844784378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754398.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1U8PVK20.0A0A1U8PVK2_GOSHI; nodulation-signaling pathway 2 protein-like
STRINGGorai.010G048800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-161GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]