PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G0536
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 340aa    MW: 38573.6 Da    PI: 5.3226
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G0536genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35131052103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+ ++ li+w + +nsf+v+d  +f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF++++F +g+k+ll++i 
   Gh_A06G0536  13 FVAKTYQMVNDPMTDGLITWGKANNSFIVIDLLDFSQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFANEWFLRGQKHLLKNIA 100
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_A06G0536 101 RRKHN 105
                   **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-509102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3210102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3510102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEADSNPKIV APFVAKTYQM VNDPMTDGLI TWGKANNSFI VIDLLDFSQR ILPVYFKHSN  60
FSSFVRQLNT YGFKKVDPDK WEFANEWFLR GQKHLLKNIA RRKHNKNPFM QLKAEDLEDE  120
EIVMEIARLK DEQKSLEEEL QGMNKRLEAT ERRPQQMMEF LYKVVEDPDL LPRMMLEKER  180
TRQLNADKKR RLTMMPSNSS SSSLAVSNNS VKSEEEEDGH PGVISSPETG FDMENNFYRS  240
SYQSSPSPDQ DSKELLGQNR PHEGQLMNYG CAAVTTQLPA VMVAPTVIGN GMAVSSSGTT  300
SVAGYGDRSG QLGYFGEMAA PWMEARPRPP YPFSLLEGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-24510221129Heat shock factor protein 1
5d5v_B3e-24510221129Heat shock factor protein 1
5d5v_D3e-24510221129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.133550.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674120.0KR067412.1 Gossypium hirsutum HSF31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754645.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV524e-95HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1U8PU200.0A0A1U8PU20_GOSHI; heat stress transcription factor C-1-like
STRINGGorai.010G070900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-96heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Wang J,Sun N,Deng T,Zhang L,Zuo K
    Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum).
    BMC Genomics, 2014. 15: p. 961
    [PMID:25378022]